PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG029625.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 471aa MW: 52691.2 Da PI: 7.7715 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 295 | 340 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+r+N++f Lr+++P+ K++Ka+ L A YIk+L CCG029625.1 295 NHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLADAATYIKEL 340 799***********************6.....5****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.5E-45 | 24 | 196 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 5.20E-14 | 290 | 344 | No hit | No description |
PROSITE profile | PS50888 | 17.028 | 291 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.54E-18 | 291 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-17 | 295 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.9E-10 | 295 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.4E-16 | 297 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.52 | 405 | 471 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MEEILSSSSS SSLMSFAQET SSTLQQRLQF FLHSRPEWWV YSIFWQASKD ASGRLVLSLG 60 DGHFRGNKKY ASKDSNKQNH SKFGFNLERK SLFSEDMDMD RLVEGDVAEW YYTVSVTRAF 120 AVGDGILGRA FSSGAFIWLT GDHELQIYDC ERVKEARMHG IQTFVCVSTP SGVLELGSPD 180 LISEDWALVQ LAKSIFGADI NAGSFPKQAN QESQPQIPNR TVSNFLDFGM FSSPQKERTT 240 SLENQKESDT RKEPSGQGRS SSDSGRSDSD AGFTENNIGF KKRGRKPGGK ELPLNHVEAE 300 RQRRERLNHR FYALRSVVPN VSKMDKASLL ADAATYIKEL KSKVNELEGK LRAVSKKSKI 360 SGNANIYDNQ STSTSTMTNH IRPTPNYMSN NAMEVDVKIL GSEALIRVQS PDVNYPAARL 420 MDALRELEFS VHHASVSKVK DLVLQDVVII IPDGLVTEEV MRAAIFQRMQ N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 3e-25 | 23 | 196 | 8 | 192 | Transcription factor MYC3 |
4rqw_B | 3e-25 | 23 | 196 | 8 | 192 | Transcription factor MYC3 |
4rs9_A | 3e-25 | 23 | 196 | 8 | 192 | Transcription factor MYC3 |
4yz6_A | 3e-25 | 23 | 196 | 8 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 300 | 305 | RQRRER |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU283597 | 0.0 | GU283597.1 Populus balsamifera isolate MGR10 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence. | |||
GenBank | GU283599 | 0.0 | GU283599.1 Populus balsamifera isolate POR11 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence. | |||
GenBank | GU283603 | 0.0 | GU283603.1 Populus balsamifera isolate HAY07 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence. | |||
GenBank | GU283607 | 0.0 | GU283607.1 Populus balsamifera isolate LOV02 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011026782.1 | 0.0 | PREDICTED: transcription factor MYC2-like | ||||
TrEMBL | B9GK72 | 0.0 | B9GK72_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s11400.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 2e-66 | bHLH family protein |