PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029603.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 298aa    MW: 34531.8 Da    PI: 6.4006
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029603.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.48.1e-51201501128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  l pGfrFhPtdeelv +yLkkkve+k++++ + ik+vd+y++ePwdLpk  +++a+e+ewyfF++r +ky+++ r+nr+t+sg+Wkatg dk+++s +
  CCG029603.1  20 LLPGFRFHPTDEELVGFYLKKKVEKKPIRI-DLIKHVDVYQYEPWDLPKeaSCSAGEREWYFFCRRGRKYKNSIRPNRVTRSGFWKATGIDKPIYSVG 116
                  579***************************.99**************95346667999**************************************75 PP

          NAM  97 gel..vglkktLvfykgrapkgektdWvmheyrl 128
                  + +  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  CCG029603.1 117 KIHycIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 150
                  55577***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-5220180IPR003441NAC domain
PROSITE profilePS5100552.79720181IPR003441NAC domain
PfamPF023653.1E-2622150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MELDRLSASS KDVEEDDDIL LPGFRFHPTD EELVGFYLKK KVEKKPIRID LIKHVDVYQY  60
EPWDLPKEAS CSAGEREWYF FCRRGRKYKN SIRPNRVTRS GFWKATGIDK PIYSVGKIHY  120
CIGLKKSLVY YRGSAGKGTK TDWMMHEFRL PACKNTASLN NPEDCDIHEA EVWTLCRIFQ  180
REAPFNKKYL SSKQQCVSTD SSASPCESDN RRHNDESFEV SANNKVIESQ ATNDHFYGNN  240
NQSFAAQMSL TSQVPFTTSY LSFLNQINGD QLFGDENWDE LRPMVEFALD PSEIYCIR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-452018715174Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2760191e-112GU276019.1 Populus balsamifera isolate GAL12 haplotype B unknown gene, partial sequence.
GenBankGU2760201e-112GU276020.1 Populus balsamifera isolate KUU07 haplotype A unknown gene, partial sequence.
GenBankGU2760211e-112GU276021.1 Populus balsamifera isolate KUU07 haplotype B unknown gene, partial sequence.
GenBankGU2760221e-112GU276022.1 Populus balsamifera isolate POR11 haplotype A unknown gene, partial sequence.
GenBankGU2760231e-112GU276023.1 Populus balsamifera isolate POR11 haplotype B unknown gene, partial sequence.
GenBankGU2760241e-112GU276024.1 Populus balsamifera isolate RNA13 haplotype A unknown gene, partial sequence.
GenBankGU2760251e-112GU276025.1 Populus balsamifera isolate RNA13 haplotype B unknown gene, partial sequence.
GenBankGU2760261e-112GU276026.1 Populus balsamifera isolate STL13 haplotype A unknown gene, partial sequence.
GenBankGU2760271e-112GU276027.1 Populus balsamifera isolate STL13 haplotype B unknown gene, partial sequence.
GenBankJN7069051e-112JN706905.1 Populus fremontii isolate FCC01 locus 424060 genomic sequence.
GenBankJN7069081e-112JN706908.1 Populus trichocarpa isolate CVA01 locus 424060 genomic sequence.
GenBankJN7069091e-112JN706909.1 Populus trichocarpa isolate CJU02 locus 424060 genomic sequence.
GenBankJN7069101e-112JN706910.1 Populus trichocarpa isolate CKR02 locus 424060 genomic sequence.
GenBankJN7069111e-112JN706911.1 Populus trichocarpa isolate CSC01 locus 424060 genomic sequence.
GenBankJN7069131e-112JN706913.1 Populus trichocarpa isolate CKR01 locus 424060 genomic sequence.
GenBankJN7069141e-112JN706914.1 Populus trichocarpa isolate CKR03 locus 424060 genomic sequence.
GenBankJN7069151e-112JN706915.1 Populus trichocarpa isolate CKR04 locus 424060 genomic sequence.
GenBankJN7069161e-112JN706916.1 Populus trichocarpa isolate CWY14 locus 424060 genomic sequence.
GenBankJN7069171e-112JN706917.1 Populus trichocarpa isolate CJU04 locus 424060 genomic sequence.
GenBankJN7069181e-112JN706918.1 Populus trichocarpa isolate CVA02 locus 424060 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026747.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1
TrEMBLA0A3N7E8760.0A0A3N7E876_POPTR; Uncharacterized protein
STRINGPOPTR_0003s14950.11e-170(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.14e-86NAC domain containing protein 42