PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029565.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 400aa    MW: 44863.6 Da    PI: 6.4046
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029565.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.4e-52141421128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                  + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLp + ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +
  CCG029565.1  14 MLPGFRFHPTDEELVGFYLKRKIQQRSLPI-ELIKQVDIYKYDPWDLPkELATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSdG 110
                  579***************************.89***************445566889**************************************956 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++ +glkk+Lvfy+gra kg ktdW+mhe+rl
  CCG029565.1 111 TRCIGLKKSLVFYRGRAAKGMKTDWMMHEFRL 142
                  667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5713173IPR003441NAC domain
PROSITE profilePS5100556.90214173IPR003441NAC domain
PfamPF023651.5E-2516142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MEEKNDVDKI DDVMLPGFRF HPTDEELVGF YLKRKIQQRS LPIELIKQVD IYKYDPWDLP  60
KELATTGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSDG TRCIGLKKSL  120
VFYRGRAAKG MKTDWMMHEF RLPSLAEPPP PKKLLDKSLP PNDAWAICRI FKKTNSMAQR  180
ALSHSWVSPV LPETTASDFF AQGAHCTQFS SENMSCTTEI GSNFHLGSNN DFQQAPPAGL  240
PVLDIPSYRP INPLVHTSYI FPVSNGDLPN NFLFSPLENS GPIKSTDDAP SMLLNPALMG  300
EAGKASESTE YEGSQQQFNG FSINLLQEMQ GDIGTGDETG LRKNPSSIQD NNLMGTFRSI  360
GFPFSLPSNL PDAWKSNLPW DSPSCPSEMS TTYSTNKCHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-511617619168NO APICAL MERISTEM PROTEIN
1ut4_B2e-511617619168NO APICAL MERISTEM PROTEIN
1ut7_A2e-511617619168NO APICAL MERISTEM PROTEIN
1ut7_B2e-511617619168NO APICAL MERISTEM PROTEIN
4dul_A2e-511617619168NAC domain-containing protein 19
4dul_B2e-511617619168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010602.10.0PREDICTED: protein FEZ-like isoform X1
TrEMBLA0A2K1X4Z90.0A0A2K1X4Z9_POPTR; Uncharacterized protein
STRINGPOPTR_0017s11830.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.14e-99NAC family protein