PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG029519.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 622aa    MW: 68255.5 Da    PI: 6.7553
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG029519.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.2e-32256312259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kk +ers  d++v+ei+Y+g+Hnh+
  CCG029519.1 256 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKILERSL-DGQVTEIVYKGSHNHP 312
                  8****************************************.***************8 PP
2WRKY105.13.8e-33429487159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  CCG029519.1 429 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYQGCPVRKHVERASHDLRAVITTYEGKHNHD 487
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-27242315IPR003657WRKY domain
SuperFamilySSF1182909.02E-25250314IPR003657WRKY domain
PROSITE profilePS5081123.124250314IPR003657WRKY domain
SMARTSM007743.1E-35255313IPR003657WRKY domain
PfamPF031062.6E-24256312IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-37414489IPR003657WRKY domain
SuperFamilySSF1182901.57E-29421489IPR003657WRKY domain
PROSITE profilePS5081138.377424489IPR003657WRKY domain
SMARTSM007741.9E-39429488IPR003657WRKY domain
PfamPF031067.8E-26430487IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MASSPGSLDT SANSHSEGSS NYFSFNTNSS SHYPFMTSSS LTDLLASSDE EPNNHITNNS  60
KLSDRIAERT GSGVPKFKSI PPPSLPLSPP PVSPSSYFAI PAGPAELLDS PVLLNPSNIL  120
PSPTTGTFPA QAFNWKSSYG NSLQNVKKED KTLSDFSFQQ PARPPTTSTA MFQSSNSTIQ  180
PEQQQTWGFQ ESAKQDAFVS GKNSMVKMEY NSNSMQSFSP EIAAIQTNPQ SNNGFQSDYG  240
NQQQQYQSVR EQRRSDDGYN WRKYGQKQVK GSENPRSYYK CTYPNCPTKK ILERSLDGQV  300
TEIVYKGSHN HPQPQSTRRS SSSTAASNLG MIPAPNRNPN EIQEQSYVNH GSGQMDSVAT  360
PENSSISIGD DDFDSQRSRS GGGDDFDEDE PEAKRWKREG DNEGISAPGN KAVREPRVVV  420
QTTSDIDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTYQGC PVRKHVERAS HDLRAVITTY  480
EGKHNHDVPA ARGTGSRSLP GHNYNGNNNS NHAAMAIRPS AVNHVFNNSI DNPIRDQRVP  540
TTSSEGNMPF ALEMLQSPAG SFGFSGFGNL MGPYMNQSSS DEVFSRAKRE LEVENFCGTG  600
TFSGGSRNPD MHTPPVTLAM EG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-36247490878Probable WRKY transcription factor 4
2lex_A8e-36247490878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774240.0GQ377424.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041840.10.0PREDICTED: probable WRKY transcription factor 25
SwissprotQ6B6R41e-134WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLC9DHZ30.0C9DHZ3_9ROSI; WRKY transcription factor 4
STRINGPOPTR_0019s14460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.17e-91WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]