PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG029261.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 403aa MW: 45120.7 Da PI: 5.5786

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG029261.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.9	2e-53	21	148	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lppGfrFhPtdeel+++yL+ kv + ++ i+evd++++ePw+Lp+ +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+ +g CCG029261.1 21 LPPGFRFHPTDEELITFYLASKVFNGSFCG-VDIAEVDLNRCEPWELPAVAKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSAsTG 117 79***********************877.34***********9888999**********************************98788 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +l g+kktLvfykgrap+gekt+Wvmheyrl CCG029261.1 118 ALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 148 89*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.59E-64	16	170	IPR003441	NAC domain
PROSITE profile	PS51005	59.819	21	170	IPR003441	NAC domain
Pfam	PF02365	1.0E-27	22	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010014	Biological Process	meristem initiation
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MLAMEELLCE LTCEDINEQG LPPGFRFHPT DEELITFYLA SKVFNGSFCG VDIAEVDLNR 60 CEPWELPAVA KMGEREWYFF SLRDRKYPTG LRTNRATGAG YWKATGKDRE VYSASTGALL 120 GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFSYRHSCKE EWVICRIFHK KGEKKNVFVQ 180 AGQGYHLMEA SSPANSGSLP PLLEASASIF DQCQSKNTVV EAFQNAFLMH EHQENDLKSL 240 VNPLVSQSNA MSINGFQPCF SPTTISINST TTSTNKNTDT NTNNQSPSML FKSIVSYQDC 300 ALKEQSSTLY TQCNTEANFS HFQLHDAHLG CVDKIIHPNP YQNNPLFFET DCSSNILGFS 360 ESASAADTIA HDMSTSIGFS GAGLQMMLDT PIRLPAESWP FDP

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MLAMEELLCE LTCEDINEQG LPPGFRFHPT DEELITFYLA SKVFNGSFCG VDIAEVDLNR  60
CEPWELPAVA KMGEREWYFF SLRDRKYPTG LRTNRATGAG YWKATGKDRE VYSASTGALL  120
GMKKTLVFYK GRAPRGEKTK WVMHEYRLDG DFSYRHSCKE EWVICRIFHK KGEKKNVFVQ  180
AGQGYHLMEA SSPANSGSLP PLLEASASIF DQCQSKNTVV EAFQNAFLMH EHQENDLKSL  240
VNPLVSQSNA MSINGFQPCF SPTTISINST TTSTNKNTDT NTNNQSPSML FKSIVSYQDC  300
ALKEQSSTLY TQCNTEANFS HFQLHDAHLG CVDKIIHPNP YQNNPLFFET DCSSNILGFS  360
ESASAADTIA HDMSTSIGFS GAGLQMMLDT PIRLPAESWP FDP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-51	18	173	12	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269\|PubMed:12837947, ECO:0000269\|PubMed:17122068}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00241	DAP	Transfer from AT1G76420	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269\|PubMed:16854978}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011034819.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
Swissprot	Q9S851	1e-108	NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBL	B9GPP5	0.0	B9GPP5_POPTR; Uncharacterized protein
STRING	POPTR_0002s00730.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7888	33	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	1e-110	NAC family protein

Publications ? help Back to Top
Chen C, et al. Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.). J. Exp. Bot., 2014. 65(17): p. 4943-58 [PMID:24962999] Gonçalves B, et al. A conserved role for CUP-SHAPED COTYLEDON genes during ovule development. Plant J., 2015. 83(4): p. 732-42 [PMID:26119568] Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis. Plant J., 2017. 90(3): p. 435-446 [PMID:28161901] Espinosa-Ruiz A, et al. TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana. Development, 2017. 144(9): p. 1619-1628 [PMID:28320734] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]