PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG029013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 180aa MW: 19612.9 Da PI: 5.2723 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 8.9e-19 | 15 | 65 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr +k +g+Wv+eIr+p gk++r++lg+f t+e+Aa+a++ a++ ++g CCG029013.1 15 SSYTGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAAAAYDVAALHFRG 65 679****999.**********8...557**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.64E-21 | 15 | 74 | No hit | No description |
SuperFamily | SSF54171 | 5.3E-22 | 15 | 74 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.1E-12 | 15 | 65 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-31 | 16 | 74 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.6E-34 | 16 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.616 | 16 | 73 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-9 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-9 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MEGRNSTANH GGIASSYTGV RKRKWGKWVS EIREPGKKTR IWLGSFETPE MAAAAYDVAA 60 LHFRGCEAKL NFPDRAGKLP MPASSSADHI RMAAHQAAIS LRPSTADSSQ GGSSSSNVGP 120 ITVRLSASQI QAINESPLDS PKMWMQMAEI ATLEESSMMF SDDIEDDEWD NNQTDPLWGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-17 | 17 | 75 | 6 | 65 | ATERF1 |
3gcc_A | 8e-17 | 17 | 75 | 6 | 65 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011007591.1 | 1e-131 | PREDICTED: ethylene-responsive transcription factor ERF021-like | ||||
Swissprot | Q9C9I2 | 4e-61 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | B9GFN9 | 1e-108 | B9GFN9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s18180.1 | 1e-109 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1777 | 31 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 3e-60 | ERF family protein |