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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG028963.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 323aa MW: 34627.6 Da PI: 6.7376 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 94.7 | 7.4e-30 | 112 | 165 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+ H+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl CCG028963.1 112 RPRLVWTPQVHKRFVDAVAHL-GIKNAVPKTIMQLMNVDGLTRENVASHLQKYRL 165 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.725 | 109 | 168 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.75E-20 | 109 | 169 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-30 | 111 | 170 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-23 | 113 | 165 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-6 | 115 | 164 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MREDDSNWFS RWEEELPSLE ELMPLSQTLI TPDLALAFDI TNPTNTTNTN NHNSSLHQNQ 60 PLPPPPPPPA AVSPTPTNPL ASPQPNSGDF ATDSGELGSG AGGDEPARTL KRPRLVWTPQ 120 VHKRFVDAVA HLGIKNAVPK TIMQLMNVDG LTRENVASHL QKYRLYLKRM QGLSSGGGGA 180 GNGTVGGGGG LTGGTDAATD HLFASSPVPA HFLHPGRSNS DHFLPFVPVA ALQHHHHQQQ 240 MVAAAAAVAH PQLQGQYHRP MGHFGSPTNG QFEHPFLARQ TQQPVHRMGA PVHNAVPGYV 300 EDLESANGNE GRKVLTLFPT GDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 1e-32 | 112 | 168 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213414 | 0.0 | AC213414.1 Populus trichocarpa clone POP015-I11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011041393.1 | 0.0 | PREDICTED: transcription factor PCL1-like | ||||
Swissprot | O22210 | 4e-65 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | B9P528 | 1e-164 | B9P528_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s03240.1 | 1e-165 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8542 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 9e-90 | G2-like family protein |
Publications ? help Back to Top | |||
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