PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG028867.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 554aa MW: 60241.9 Da PI: 7.5011

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG028867.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.9	2.4e-05	263	295	19	55
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +f+ Lr l+P+ ++K +Ka+ L +++e+++ Lq CCG028867.1 263 RFQMLRALIPHG----DQKRDKASFLLEVIEHVQFLQ 295 699******7....7****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.12E-5	263	299	No hit	No description
SuperFamily	SSF47459	1.02E-8	263	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-11	263	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MELPQQRPFG TEGRKPTHDF LSLYSHSSTV HQDPRPPSQG GFLQTHDFLQ PLEQVSKATA 60 REDANVEILT IDKPPPPAPP PSVEHILPGG IGTYSISHVS YFNQRVPKPE NTIFSVAQAS 120 STDKNDENSN CSSYSASGFT LWEESTLKKG KTGKENVGER SNIIREAAAK TGQWTTSERP 180 SQSSSNNHRN SFSSLSSSQP PGLKCTQSFI EMIRSAKGGN LDDDLDDEET FLLKKETPSP 240 IHKEELRIKV DGKSNDQKPN TPRFQMLRAL IPHGDQKRDK ASFLLEVIEH VQFLQEKVQK 300 YEGSYQGWNH EHAKLGPWRS NSRPVESSVD QSRGVNSGVG PALLFAANLD EKNINISPST 360 NPGGARNAVE SNMSSASTFN AMEHHPNLGI TNKTMPFPIS LQPNLFHPGR IAGAAAQFPP 420 RLAFDAENTA TQPQPQPQPQ PQPCHAISCT SDGAVASDKL KQQNLTVEGG TISISSALLN 480 TLTQALQSSG VDLSQASISV QIELGKKGNS RQTAPTSIVK DNNVPPSNQG TIRSRVSSGE 540 ESDQVLKKLK TSKG

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MELPQQRPFG TEGRKPTHDF LSLYSHSSTV HQDPRPPSQG GFLQTHDFLQ PLEQVSKATA  60
REDANVEILT IDKPPPPAPP PSVEHILPGG IGTYSISHVS YFNQRVPKPE NTIFSVAQAS  120
STDKNDENSN CSSYSASGFT LWEESTLKKG KTGKENVGER SNIIREAAAK TGQWTTSERP  180
SQSSSNNHRN SFSSLSSSQP PGLKCTQSFI EMIRSAKGGN LDDDLDDEET FLLKKETPSP  240
IHKEELRIKV DGKSNDQKPN TPRFQMLRAL IPHGDQKRDK ASFLLEVIEH VQFLQEKVQK  300
YEGSYQGWNH EHAKLGPWRS NSRPVESSVD QSRGVNSGVG PALLFAANLD EKNINISPST  360
NPGGARNAVE SNMSSASTFN AMEHHPNLGI TNKTMPFPIS LQPNLFHPGR IAGAAAQFPP  420
RLAFDAENTA TQPQPQPQPQ PQPCHAISCT SDGAVASDKL KQQNLTVEGG TISISSALLN  480
TLTQALQSSG VDLSQASISV QIELGKKGNS RQTAPTSIVK DNNVPPSNQG TIRSRVSSGE  540
ESDQVLKKLK TSKG

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011010364.1	0.0	PREDICTED: transcription factor BIM1 isoform X1
Swissprot	Q9LEZ3	1e-109	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A2K1XI22	0.0	A0A2K1XI22_POPTR; Uncharacterized protein
STRING	POPTR_0015s03550.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7252	31	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.4	1e-104	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]