PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG028772.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 459aa MW: 51316.9 Da PI: 6.1585 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 51.2 | 4.2e-16 | 21 | 74 | 1 | 55 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaee 55 lppGfrFhPtdeel+++yL+ kv + ++ i+evd++++ePw+Lp + ++++ CCG028772.1 21 LPPGFRFHPTDEELITFYLASKVFNGSFCG-VEIAEVDLNRCEPWELPDAWHHQK 74 79*************************877.45***************5443333 PP | |||||||
2 | NAM | 107.4 | 1.7e-33 | 129 | 207 | 51 | 128 |
NAM 51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev+s+ +g+l g+kktLvfykgrap+gekt+Wvmheyrl CCG028772.1 129 AKMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVYSAsTGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRL 207 456889*************************************9878889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.24E-18 | 12 | 72 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.293 | 21 | 229 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-26 | 22 | 207 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.31E-40 | 126 | 229 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MLAMEELLCE LSSEGLNDQG LPPGFRFHPT DEELITFYLA SKVFNGSFCG VEIAEVDLNR 60 CEPWELPDAW HHQKKMIGIF PLALDCCYDL ACLIPHTHTH STAGSFQNYV SSSSLHPLLE 120 DASPFSDVAK MGEREWYFFS LRDRKYPTGL RTNRATGAGY WKATGKDREV YSASTGALLG 180 MKKTLVFYKG RAPRGEKTKW VMHEYRLDGD FSYRHTCKDE WVICRIFHKK GEKKDVFLQA 240 EQGYHLLEVY SPANSGSLPP LLDASSASFF DQCQSKNKVI DALQNAFLIT EHQENDLKSL 300 PNPLVSQSHV VSINGLQPSF SPTPISINSP ATSTNKNTNT DNNNQSPSML LKSILSYQDC 360 TLKEQFSTVS KQWKTEASFS HDATFGGVDK ITHPHPYLNN PMFFEMDCSS NVPGFSGSAS 420 AADTMIHDMS TSIGFSRAGL QMMLDTPIRL PGESWPLDP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-31 | 129 | 230 | 66 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-31 | 129 | 230 | 66 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-31 | 129 | 230 | 66 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-31 | 129 | 230 | 66 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-31 | 129 | 230 | 69 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-31 | 129 | 230 | 69 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-31 | 129 | 230 | 69 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-31 | 129 | 230 | 69 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-31 | 129 | 230 | 69 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-31 | 129 | 230 | 69 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-31 | 129 | 230 | 69 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-31 | 129 | 230 | 69 | 169 | NAC domain-containing protein 19 |
3ulx_A | 3e-31 | 129 | 232 | 64 | 171 | Stress-induced transcription factor NAC1 |
4dul_A | 2e-31 | 129 | 230 | 66 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-31 | 129 | 230 | 66 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR605205 | 3e-96 | KR605205.1 Manihot esculenta NAC transcription factors 67 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011041170.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3 isoform X1 | ||||
Swissprot | Q9S851 | 7e-62 | NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3 | ||||
TrEMBL | A0A2K2AMK6 | 0.0 | A0A2K2AMK6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s27720.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7888 | 33 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 1e-61 | NAC family protein |
Publications ? help Back to Top | |||
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