PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028694.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 686aa    MW: 79602.3 Da    PI: 6.2142
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028694.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.88.5e-2465156190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                  ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke     ++w+v+++++ HnHel 
  CCG028694.1  65 EYYSNFARKNGFSIRKARSTESQHLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSIRCGCDAKLYLTKEIvdgLAQWYVSQFSNVHNHELL 156
                  69********************9998.******************************************998756679*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-2165156IPR004330FAR1 DNA binding domain
PfamPF105516.2E-24288381IPR018289MULE transposase domain
PROSITE profilePS509669.953560595IPR007527Zinc finger, SWIM-type
PfamPF044342.9E-7562594IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-4570597IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MKPSNNIWIR RQQCPCGDWK CYIKYEGDDQ TSASSQLGKS ETTSTELVFT PYVGQIFKSD  60
DDAFEYYSNF ARKNGFSIRK ARSTESQHLG IYRRDFVCYR SGFNQPRKKA NVEHPRDRKS  120
IRCGCDAKLY LTKEIVDGLA QWYVSQFSNV HNHELLEDDQ VRLLPAYRKI QEADQERILL  180
LSKAGFPINR IVKVLELEKG VQPGHFPFIE KDVRNFVRTC KKTVQENDAL LTEKRENDTL  240
ELLEACKSVA ERDPDFAYDY TTDENQKVEN IAWLYGDPVR AYTLYGDVVT FDTTYRSITY  300
GLLLGVWFGM DNHGKAILYG CVLLQDESSN SFTWALQTFV RLIRGRHPQT IVTDMELALR  360
DAIARELPNT KHVVCIWHIL SKLSSWLSFP LGSRYEDFKA EFDLLCHVEN VEDFEHQWNL  420
LVARFELVTD KHMALLFSYR GFWSLSYIRG SFLARTMAPE FSQSLHTFLK RILDGQTCLQ  480
AFFEQIGLAA TVGNQNRDGA RYMHIKTCLP IEEHARSVLT PYAFNVLQHE IVLSLQYAIQ  540
EMADGSYLVQ HFKKMDGECF VIWMPEDEQI HCSCKEFEHS GILCRHSLRL LEVKNYFQLP  600
ERYFPLRWRR DQSPVPMDDQ NAQSNNDECA QEFHALAEAL LTESLISKER FNHVQREITG  660
LLAEVRSMPV AEELSLNIPP NNVSET
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010202.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLB9IAT40.0B9IAT4_POPTR; FAR1 family protein
STRINGcassava4.1_002824m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]