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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG028681.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 332aa MW: 35518.1 Da PI: 6.721 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27 | 7.9e-09 | 181 | 225 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR ri ++ L+el+P++ K + a++L + v+Y+k L CCG028681.2 181 HSIAERLRRVRITERVKALQELVPTC-----NKTDRAAMLDEIVDYVKFL 225 99***********************8.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.86E-10 | 174 | 230 | No hit | No description |
SuperFamily | SSF47459 | 2.09E-14 | 174 | 236 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.783 | 176 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-14 | 178 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-6 | 181 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-9 | 182 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MAGNPPPEGL GDDFLEQILA VQPPGYGGGG EVMGSTSPPM MGLQLGSCAG NVGLLRSNAN 60 NNMGMMPLGL NLEHHGFLRQ QQDDSGSSLD TNNSNNINNT SPSIKSARIL GRDSVHMTSL 120 FPTFGHLQIH SSIRPTPPPP GPPQIHQINS HPNPGAVSAV PQPPGIRPRV RARRGQATDP 180 HSIAERLRRV RITERVKALQ ELVPTCNKTD RAAMLDEIVD YVKFLRLQIK VLSMSRLGAA 240 GAVAQLVADV PLSSVQGEGN EGGANQQSWE NWSNDDTEQE VAKLMEEDVG AAMQFLQSKA 300 LCIMPISLAS AIFRARPPNA STLINTESNT PS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC237587 | 1e-164 | AC237587.1 Populus trichocarpa clone POP036-C05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011038575.1 | 0.0 | PREDICTED: transcription factor UNE12-like | ||||
Swissprot | O22768 | 7e-78 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A2I4KKU0 | 0.0 | A0A2I4KKU0_POPTR; BHLH family protein | ||||
STRING | POPTR_0005s05500.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11205 | 32 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 2e-66 | bHLH family protein |
Publications ? help Back to Top | |||
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