PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG028452.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARF | ||||||||
Protein Properties | Length: 683aa MW: 75078.7 Da PI: 7.9506 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.8 | 5e-24 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + +++ CCG028452.1 129 FAKTLTQSDANNGGGFSVPRYCAETIfprldytAEPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAENGD 222 89****************************986555555..8999*********************************************..448899 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+++r+ CCG028452.1 223 LCVGIRRA 230 9****997 PP | |||||||
2 | Auxin_resp | 115.5 | 4.9e-38 | 281 | 364 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fe vY+Prast+eF+vk++ v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ CCG028452.1 281 AASLAANGQPFEAVYYPRASTPEFCVKASAVRSAIQIQWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 364 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.9E-38 | 121 | 237 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-30 | 122 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.89E-22 | 128 | 229 | No hit | No description |
SMART | SM01019 | 9.4E-23 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-22 | 129 | 230 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.38 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.2E-33 | 281 | 364 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 16.142 | 597 | 677 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MIREFAVMNS QKEKMRVAEK CLDSQLWHAC AGSMVQMPAV NSKVFYFPQG HAEHAQGSVE 60 FGHFQIPALI PCKVSAIKYM ADPETDEVYA KIRLIPLNNS VLMLGHGCGE DNDDRLHSGI 120 ESQEKPASFA KTLTQSDANN GGGFSVPRYC AETIFPRLDY TAEPPVQTIL AKDVHGETWK 180 FRHIYRGTPR RHLLTTGWSN FVNQKKLVAG DSIVFLRAEN GDLCVGIRRA KRGIGGNECS 240 SGWNSFGGYS GFLREDESKL MRRNGNGDMK GKVKAESVIE AASLAANGQP FEAVYYPRAS 300 TPEFCVKASA VRSAIQIQWC PGMRFKMAFE TEDSSRISWF MGTISSVQVA DPIRWPNSPW 360 RLLQVAWDEP DLLHNVKRVS PWLVELVSNM PAIHLSPFSP PRKKLRLPQP PDFPSLGQIP 420 MPSFTGNPHR SNSPLCCVSD NIPAGIQGAR HAQFGLSSSD LHFNKLQAGL FPVDFQRLDR 480 AAPPSRISNS NFVGNTQNSE SISCLLTMGN SSQSMKGSDT KTPHILLFGQ LIVTDQQSSQ 540 SCSGDTNANS SSDGRPGKAI SDGSGSASRQ NVPLENSSGG RCPWYKDYQK TDLGLEAGHC 600 KVFMESEDVG RTLNLSVLGS YEELHRKLDN TFGIESSEML SNVLYRNAAG ATKHAGDEPF 660 SEFLKTARRL TILSDASSDN VGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 5e-79 | 8 | 385 | 37 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011041011.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A2K1YYK2 | 0.0 | A0A2K1YYK2_POPTR; Auxin response factor | ||||
TrEMBL | A0A385JIK6 | 0.0 | A0A385JIK6_POPTO; Auxin response factor | ||||
STRING | POPTR_0010s23000.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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