PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG028287.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 298aa MW: 33703.2 Da PI: 4.6123

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG028287.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5.3e-05	174	218	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++ r RR++i ++ eL + +P K++ ae+ + A +Y+k Lq CCG028287.1 174 SIAARERRRKITEKTRELGKFIPGgH------KMNTAEMFQAASKYVKFLQ 218 67889****************955......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.484	168	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.94E-7	171	221	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-8	172	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-9	172	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-6	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MALSFCSSLG SSLQHHNLQE LTEYPQGDIE IGNDQLFACN DNMMFSDAFI NPLYEVEEQL 60 VYSDSYTDLL PYFSSPSDNI ISLSPEIFPL QDFESYHYLK RPKTYTDHFI STFEPNFFEG 120 CAPNPNPRLP ELFPEIPAPE PKFQVPITFN VGRTDQSVMN SKKPSTGVSL STQSIAARER 180 RRKITEKTRE LGKFIPGGHK MNTAEMFQAA SKYVKFLQAQ IGILELMGST QENKGPMHTQ 240 ELQTLLVTSP TIQEKLYSEE KCLVPRDFVQ TIANDCQIQS KPLIIEEIDQ LLGGQLLG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011040520.1	0.0	PREDICTED: transcription factor bHLH52-like
Swissprot	Q84RD0	7e-34	BH053_ARATH; Transcription factor bHLH53
TrEMBL	B9I0X7	0.0	B9I0X7_POPTR; Uncharacterized protein
STRING	POPTR_0011s16100.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3459	30	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	3e-33	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]