PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028263.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 687aa    MW: 76095 Da    PI: 7.4713
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028263.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.4e-24113214199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f k+lt+sd+++ g +++p+ +ae++      +++++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +++ l
  CCG028263.1 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldySSDPPLQ-TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAENGDL 207
                  89*****************************96666664.9************************************************..4488899 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +v+++r+
  CCG028263.1 208 CVGIRRS 214
                  ****996 PP
2Auxin_resp114.41.1e-37275357283
   Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a  a+++++F+vvY+Pr+st+eF+vk+++v++a+++ ++ GmRfkmafetedss++++ +Gtv++v+ +dpvrWpnS+Wr+L+
  CCG028263.1 275 AGLAANGKPFQVVYYPRSSTPEFCVKASSVRAAMRIGWCSGMRFKMAFETEDSSRISWfMGTVTSVQVADPVRWPNSPWRVLQ 357
                  66799****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-37105216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-28108215IPR015300DNA-binding pseudobarrel domain
CDDcd100175.36E-22112213No hitNo description
SMARTSM010191.8E-22113215IPR003340B3 DNA binding domain
PfamPF023623.6E-22113214IPR003340B3 DNA binding domain
PROSITE profilePS5086313.014113215IPR003340B3 DNA binding domain
PfamPF065071.2E-32274357IPR010525Auxin response factor
PROSITE profilePS5174511.13596671IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MKETEKKSLD PQLWQACAGS MVHIPPLNSI IFYFPQGHAE HSQSPVNFPQ RIPSLILCRV  60
ATVKFLADPD TDEVYAKIGF VPLPNTDLDF AQDRGLCGNG NDSDSCPDKP ASFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYSSDPPL QTVIAKDVHG EVWKFRHIYR GTPRRHLLTT  180
GWSTFVNQKK LVAGDSIVFL RAENGDLCVG IRRSKRGIGI GSGPESSLTT GWNSNNATCA  240
IPYDGFSLFV KEDEMRNGGM KGRGRVKPEE VLEAAGLAAN GKPFQVVYYP RSSTPEFCVK  300
ASSVRAAMRI GWCSGMRFKM AFETEDSSRI SWFMGTVTSV QVADPVRWPN SPWRVLQVAW  360
DEPDLLQNVK RVSPWLVELV SNMPVIHLSP FSPPRKKSRF PQQLDFPLDL QFRLPSFSGN  420
PLGPSSPLCC LYDNTPAGIQ GARHAQFGIS LSDIQFNNKL QSGMFLSSLQ RFNPHSRNSE  480
TYLTGLTNSN ENISCLLTMG NSNPNLEKSD NVKKHQFLLF GQPILIEQHI SHSCSTDAVS  540
QVINERNSSH ESSNKEKISD VLLSAPGKKI PQVKSCSTGF SWHQSLHNTS EIGRDTGPCK  600
VFLESEDVGW TLDLSALCSY EELDGKLADM FGIERSEMSR HVLYRDATGA VKQIGDEPFR  660
TWITGMQNAE NGQEAPNKTG CITQRGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-79437846388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010056.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2K1Z1420.0A0A2K1Z142_POPTR; Auxin response factor
STRINGPOPTR_0009s02020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]