PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028256.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 320aa    MW: 35566.7 Da    PI: 8.8508
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028256.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.26.8e-33183240259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK v++s +pr+YYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+
  CCG028256.1 183 EDGYRWRKYGQKAVRNSSYPRNYYRCTTQKCTVKKRVERSFQDPSIVITTYEGQHNHP 240
                  8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-34167242IPR003657WRKY domain
SuperFamilySSF1182906.02E-29174242IPR003657WRKY domain
PROSITE profilePS5081131.181177242IPR003657WRKY domain
SMARTSM007741.0E-37182241IPR003657WRKY domain
PfamPF031063.2E-25183240IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSNEHRDLYC HTPFQEDRRG VKPLSILDSS TYNSPGQGFD PSPYMSFSEC LHGSLDFNSL  60
AKAYGLSPSS SEVFSSIEGN SKPVEARVLG WGNSTDQIPA TPNSSLSFSS SEAGGDEDSG  120
KTKKETQPSR PEDGGECSDK KEDGVTLVVK TIHVISKAKK KAEQRKKEPR FAFMTKSEVD  180
HLEDGYRWRK YGQKAVRNSS YPRNYYRCTT QKCTVKKRVE RSFQDPSIVI TTYEGQHNHP  240
IPTTIRGSAS AMFSHSMLTP APLATGPRRF PAHLQGYNLV QMPAATSNKN LGAYPQNVNQ  300
VPDYGLLQDI VPSMLFRQEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-27172242777Probable WRKY transcription factor 4
2lex_A8e-27172242777Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774491e-109GQ377449.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010013.10.0PREDICTED: probable WRKY transcription factor 28 isoform X1
TrEMBLA0A2K1YH470.0A0A2K1YH47_POPTR; Uncharacterized protein
STRINGPOPTR_0011s02790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.13e-58WRKY DNA-binding protein 28