PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028189.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 708aa    MW: 78023.5 Da    PI: 9.0409
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028189.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.7e-23112213199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +  tl+ +d +g +W++++iyr++++r++lt+GW+ Fv +++L +gD++vF   + +++ 
  CCG028189.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TLIAKDVHGAVWKFRHIYRGTPRRHLLTTGWSAFVTQKKLVAGDSIVFL--RAENGD 205
                  89****************************996555545..8************************************************..448899 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  CCG028189.1 206 LCVGIRRA 213
                  9****997 PP
2Auxin_resp115.83.6e-38275357283
   Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a  a+++++F+vvY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dpvrWpnS+Wr+L+
  CCG028189.1 275 AGLAANGNPFQVVYYPRASTPEFCVKASSVRAAMRTSWCSGMRFKMAFETEDSSRISWfMGTVASVQVADPVRWPNSPWRLLQ 357
                  66799****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-38102216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-29109215IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-20111212No hitNo description
PfamPF023623.8E-21112213IPR003340B3 DNA binding domain
SMARTSM010193.3E-21112214IPR003340B3 DNA binding domain
PROSITE profilePS5086312.731112214IPR003340B3 DNA binding domain
PfamPF065074.6E-33274357IPR010525Auxin response factor
PROSITE profilePS5174515.242594672IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MKKTDKKSLD PQLWQACAGS MVQIPPLNSK VFYFPQGHAE HSQSPVDFPQ IIPSLVLCRV  60
ASVKFLADRG TDEVFAKISL VPLPDADLDF SQDVDICGDG NDSNNAEKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TLIAKDVHGA VWKFRHIYRG TPRRHLLTTG  180
WSAFVTQKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGIG SGPESSPSHI GWNSNNATCA  240
NSFGGFSLFV KEDEMRKGGV KGRGRVKSEE VLEAAGLAAN GNPFQVVYYP RASTPEFCVK  300
ASSVRAAMRT SWCSGMRFKM AFETEDSSRI SWFMGTVASV QVADPVRWPN SPWRLLQVTW  360
DEPDLLQTVK CVSPWLVELV SNMPVIHLSP FSPPRKKLRF PQQLDFPLDG QFQLPSFSGN  420
PLGPSSPLCC LSNNTPAGIQ GARHAQFGIS LSDFQFKNKL QSGLFLSSLQ RFNPRTKISE  480
NYPTGHPDSN KNLSFSLTKG SSNPNLEKSD NGKKHQFLLF GQPILVEQQI SHSCSADAFP  540
QVVNERNSSD RNREKNSDVL PSALGKKISQ EKSCTTGFSW HQSLQNASEI GMDTGHCKVF  600
LESEDLGRTL DLSALHSYEE LRRKLVIMFG IERSDMLSHV FYRDVTGAVK QIGDEPFSVF  660
TKTAKRLTIL MNRASGNSGG RRTWITGMRN AENGLEAPNK TGPLSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-79437846388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040890.10.0PREDICTED: auxin response factor 10
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLB9MZ570.0B9MZ57_POPTR; Auxin response factor
STRINGPOPTR_0004s22130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]