PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028110.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 81aa    MW: 8910.51 Da    PI: 11.0142
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028110.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.3e-103763329
                 HHHHHHHHHHHHHHHHHHHHHHCTSCC CS
          HLH  3 rahnerErrRRdriNsafeeLrellPk 29
                 ++h+e+ErrRR+riN  +++Lr l+P 
  CCG028110.1 37 KSHSEAERRRRERINAHLATLRGLVPC 63
                 68************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.5633481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-83766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-73764IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-83864IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MVSQALVLDV EKGELLKAPA RIGKMGISEA KAFAALKSHS EAERRRRERI NAHLATLRGL  60
VPCTEKMIRT CGVRSPFHLA S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14247ERRRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142846e-66AC214284.1 Populus trichocarpa clone POP076-F15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045927.19e-40PREDICTED: transcription factor bHLH30-like isoform X2
TrEMBLA0A2K1YGE97e-30A0A2K1YGE9_POPTR; Uncharacterized protein
STRINGPOPTR_0011s07440.15e-31(Populus trichocarpa)
STRINGcassava4.1_025964m1e-29(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.19e-08bHLH family protein