PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027923.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 372aa    MW: 41979.6 Da    PI: 5.9415
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027923.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038426123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 +kC+ C ksFs+   L  H+r+H
  CCG027923.1  4 HKCKLCFKSFSNGRALGGHMRSH 26
                 79********************9 PP
2zf-C2H214.20.00013237259123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+k+F++   L  H  +H
  CCG027923.1 237 YKCETCNKVFKSYQALGGHRASH 259
                  9************9999998887 PP
3zf-C2H212.70.0004291313123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C ++Fs+   L  H r+H
  CCG027923.1 291 HECPYCFRVFSSGQALGGHKRSH 313
                  79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.34E-5330No hitNo description
SMARTSM003550.038426IPR015880Zinc finger, C2H2-like
PfamPF139122.8E-6427IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.679431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM003550.01237259IPR015880Zinc finger, C2H2-like
PfamPF139122.8E-11237261IPR007087Zinc finger, C2H2
SuperFamilySSF576677.06E-8237259No hitNo description
PROSITE profilePS5015710.492237264IPR007087Zinc finger, C2H2
PROSITE patternPS000280239259IPR007087Zinc finger, C2H2
SuperFamilySSF576677.06E-8286313No hitNo description
PfamPF139123.4E-11290314IPR007087Zinc finger, C2H2
SMARTSM003550.17291313IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286291313IPR007087Zinc finger, C2H2
PROSITE patternPS000280293313IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEKHKCKLCF KSFSNGRALG GHMRSHMLNL PIPPKLEDQF PDIEVSEDSE STSSSEEEAE  60
EGEEEEEKAV FYGLRENPKR CTRLADPEFS FAAVDAGSVV LQDRESETES SKNPTRRRSK  120
RTKSLLEHHH QYHQQRPRQE QENNIIIKKL EFKKMGSIKA AAESSWGHEP EPVSSISGTT  180
TEEDVAFCLV MLSRDKWKRK EQENQEEEQE FEEELAEAET DDSDEFKSCK TKTRGKYKCE  240
TCNKVFKSYQ ALGGHRASHK KLKVYTPSKA PKLEPTENAG ASTSLPEKKT HECPYCFRVF  300
SSGQALGGHK RSHLIGVAAS SSTPARSATK IGDNNWGFID LNLPAPLDDD DISQVDQLSA  360
VSDAEFINYV KR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017454.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A3N7EQJ90.0A0A3N7EQJ9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s14460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-55C2H2-like zinc finger protein