PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027920.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 476aa    MW: 51969.9 Da    PI: 8.6675
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027920.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.2e-16295341455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  CCG027920.1 295 VHNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 341
                  6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-19288358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.873291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-13295341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17295349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.94E-17296345No hitNo description
SMARTSM003532.2E-18297346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MSHQCVPSWE LDDNPTTAPK VSLRSHSNSG APYMPMLNYE VAELTWENGQ LAMHGLGQPR  60
VPAKPIASTS PSKYTWDKPR ASGTLESIVN LATCIPQCNK QTFDNSGSDH DLVPWFNHHR  120
ASASATMTMD ALVPCSKRSD QERTTRVIDS SPAGLGTDCV VGCSTRVGSC SAPTATQNEV  180
VGLLTRKREK VARVPVPAEW SRDQSVNRGA TFSKKDSQQV TVDSCERELG VGFTSTSFGS  240
QENTSSGTKP CTKTITADEN DSVCHRRPQA SDEDDKKKGN GKSSVSNRRS RAAAVHNQSE  300
RKRRDKINQR MKTLQKLVPN SSKTDKASML DEVIEYLKQL QAQVQMVIRM NMQPMMLPMA  360
LQQQLQMSMM APLSMGMAGM GMGMGVVDMN TLAARSNITG VSPVLHPTAF MPMTTWDGSN  420
CHERLPTAAP SATVMPDPLS AFLACQSQPM TMDAYSRMAS MYQQLHQQSP ASNSKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299304ERKRRD
2300305RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017451.10.0PREDICTED: transcription factor UNE10-like
SwissprotQ8GZ381e-104UNE10_ARATH; Transcription factor UNE10
TrEMBLU5GLG20.0U5GLG2_POPTR; BHLH family protein
STRINGPOPTR_0002s14430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]