PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

CCG027915.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GATA

Protein Properties

Length: 246aa MW: 27430 Da PI: 6.3121

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG027915.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.8	2.9e-18	163	197	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C + kTp+WR gp g+ktLCnaCG++y++ +l CCG027915.1 163 CSHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 197 *******************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	1.7E-72	1	244	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	2.2E-16	157	207	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.714	157	193	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	9.03E-15	160	220	No hit	No description
Gene3D	G3DSA:3.30.50.10	7.3E-14	161	195	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.03E-14	162	209	No hit	No description
Pfam	PF00320	3.9E-16	163	197	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	163	188	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009416	Biological Process	response to light stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MDVYGGVSTS APDYFLIDDL LDFSNDDLLA SSTEHHHLPP PETSSIRHHH RHFPSPTTYI 60 NNTSSLSTDF TDHLSVPSDD VADLEWLSQF MEDSFTDFPS TINIPTDTSS RNKSCSERSR 120 TTTTATSSSA DIETAVARES RLEKENNGAP HSSAETEGGA RRCSHCASEK TPQWRTGPLG 180 PKTLCNACGV RYKSGRLVPE YRPAASPTFV LTQHSNSHRK VLELRRQKEM TLRQQQQHGY 240 QGYEVC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269\|PubMed:12139008}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011017443.1	0.0	PREDICTED: GATA transcription factor 4-like
Swissprot	O49741	2e-65	GATA2_ARATH; GATA transcription factor 2
TrEMBL	B9GPB1	1e-147	B9GPB1_POPTR; GATA transcription factor
STRING	POPTR_0002s14380.1	1e-148	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13550	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60530.1	3e-61	GATA transcription factor 4

Publications ? help Back to Top
Jiang K,Yung V,Chiba T,Feldman LJ Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain. Planta, 2018. 247(4): p. 831-843 [PMID:29249045]