PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG027764.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 454aa MW: 49123 Da PI: 9.9686

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG027764.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.2	2.3e-15	376	424	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+ e+ CCG027764.1 376 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELRKKQAEMM 424 79****************************************8866554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.3E-14	372	436	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.53	374	425	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.1E-13	376	425	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.0E-11	376	425	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.9E-15	376	425	No hit	No description
CDD	cd14707	8.66E-28	376	430	No hit	No description
PROSITE pattern	PS00036	0	379	394	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0010255	Biological Process	glucose mediated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MGTNFNFKNF SNDPSDAVGG RPPGNSPLTR QSSIYSLTFD ELQNTMGGSL GKDFGSMNMD 60 ELLKNIWSAE ETQTIATATS TGVQEGGALQ RQGSLTLPRT LSQRTVDEVW KDMSKEYVIN 120 GTSAGAANNV PQRQPTLGGM TLEEFLLRAG VAIEDIQVAP KVNTNGGLLG DLSRSANNSL 180 AIGFQQNRGV GLDNDNTNQI SLQSSNLPLN VNGVRSNQAQ VQQQQQQIFP KQPNMGYVTQ 240 PNNDSTNQIS LQSSNLPLNV NGVRSNQAQV QQQQIFPKQP NLGYVTQMPL QSGPGIRGGM 300 LGIGDQGMDS GLMQGGGMGV VGLGGIATGS PANQLSSDGI GKSNGDTSSV SPVPYVFRES 360 VRGRRAGGAV EKVVERRQRR MIKNRESAAR SRARKQAYTM ELEAEVAKLK EENEELRKKQ 420 AEMMEIQKNQ VAEMMNMQQG GKKRCLRRTQ TGPW

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MGTNFNFKNF SNDPSDAVGG RPPGNSPLTR QSSIYSLTFD ELQNTMGGSL GKDFGSMNMD  60
ELLKNIWSAE ETQTIATATS TGVQEGGALQ RQGSLTLPRT LSQRTVDEVW KDMSKEYVIN  120
GTSAGAANNV PQRQPTLGGM TLEEFLLRAG VAIEDIQVAP KVNTNGGLLG DLSRSANNSL  180
AIGFQQNRGV GLDNDNTNQI SLQSSNLPLN VNGVRSNQAQ VQQQQQQIFP KQPNMGYVTQ  240
PNNDSTNQIS LQSSNLPLNV NGVRSNQAQV QQQQIFPKQP NLGYVTQMPL QSGPGIRGGM  300
LGIGDQGMDS GLMQGGGMGV VGLGGIATGS PANQLSSDGI GKSNGDTSSV SPVPYVFRES  360
VRGRRAGGAV EKVVERRQRR MIKNRESAAR SRARKQAYTM ELEAEVAKLK EENEELRKKQ  420
AEMMEIQKNQ VAEMMNMQQG GKKRCLRRTQ TGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00186	DAP	Transfer from AT1G45249	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ487100	0.0	DQ487100.1 Populus suaveolens abscisic acid responsive element-binding protein 2 (ABF2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011017194.1	0.0	PREDICTED: bZIP transcription factor TRAB1-like
Swissprot	Q9M7Q4	1e-122	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	B9GNV5	0.0	B9GNV5_POPTR; Uncharacterized protein
STRING	POPTR_0002s12710.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1962	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	2e-99	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]