PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027761.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 264aa    MW: 29593.4 Da    PI: 9.8677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027761.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08165205954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  CCG027761.1 165 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 205
                  699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-14157216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-14160215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-6166205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.23E-6179210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MESDQLRSAT EDQMEMMKLM EKLPEFYDSY NDVASHLPPT EFLAASASNI SISHFNTDNP  60
RNASSPPFMT LQSTLSSNSN STPIQDQSPQ DFFPSPSSSR WRGLGELPEA NDYATPSQKK  120
NSMATMREMI FRIAAMHPIQ IDPESVKPPK RRNVKISKDP QSVAARHRRE RISERIRILQ  180
RLVPGGTKMD TASMLDEAIH YVKFLKTQVQ SLERAQSKRP TTTTGIGFPV AKSSGSYLPM  240
GKGYHQPPAC RRQNVQNYGD ALSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017187.10.0PREDICTED: transcription factor HEC2-like isoform X1
TrEMBLB9GNV11e-163B9GNV1_POPTR; Uncharacterized protein
STRINGPOPTR_0002s12660.11e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.11e-39bHLH family protein