PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG027755.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 349aa MW: 37921.1 Da PI: 4.8219

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG027755.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.8	6.3e-16	142	188	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq CCG027755.1 142 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 188 6***********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.2E-20	135	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-20	135	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.86	138	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.02E-18	141	192	No hit	No description
Pfam	PF00010	2.1E-13	142	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-18	144	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MADLYGPARS PATEPEEIST FLQQFLGNNS SSPSSKFIDH ALSTQMETGS TAVELLDCQL 60 FGQSETECGV GAGNSGVNLS DPGGYYVKEG VDNAVSSGIS KRRGVSVEDD LGDFSCDSEG 120 AEVQANAVRP RSSSKRSRAA EVHNLSEKRR RSRINEKMKA LQNLIPNSNK TDKASMLDEA 180 IEYLKQLQLQ VQMLTMRNGL SLHPMCLPGA LQPMQPPLSG MSFDEGNGLL TTNTLTGIFS 240 ANEESSVQTA LNLPSQCTVS NQPIAIPSGT NITSSETNFG FEPLIHVNHA PFNLCTSSKV 300 CRVIWEPRRS HRDGMRTDKR VNEPGDSSGY ESAAPTNMSL WREQEPEEQ

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MADLYGPARS PATEPEEIST FLQQFLGNNS SSPSSKFIDH ALSTQMETGS TAVELLDCQL  60
FGQSETECGV GAGNSGVNLS DPGGYYVKEG VDNAVSSGIS KRRGVSVEDD LGDFSCDSEG  120
AEVQANAVRP RSSSKRSRAA EVHNLSEKRR RSRINEKMKA LQNLIPNSNK TDKASMLDEA  180
IEYLKQLQLQ VQMLTMRNGL SLHPMCLPGA LQPMQPPLSG MSFDEGNGLL TTNTLTGIFS  240
ANEESSVQTA LNLPSQCTVS NQPIAIPSGT NITSSETNFG FEPLIHVNHA PFNLCTSSKV  300
CRVIWEPRRS HRDGMRTDKR VNEPGDSSGY ESAAPTNMSL WREQEPEEQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269\|PubMed:10225997, ECO:0000269\|Ref.8}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269\|PubMed:11245574}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011017183.1	0.0	PREDICTED: transcription factor SPATULA-like isoform X2
Swissprot	Q9FUA4	3e-40	SPT_ARATH; Transcription factor SPATULA
TrEMBL	A0A3N7EN44	0.0	A0A3N7EN44_POPTR; Uncharacterized protein
TrEMBL	A0A3N7FIQ8	0.0	A0A3N7FIQ8_POPTR; Uncharacterized protein
STRING	POPTR_0002s12600.1	1e-171	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2276	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	9e-42	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Pabón-Mora N,Wong GK,Ambrose BA Evolution of fruit development genes in flowering plants. Front Plant Sci, 2014. 5: p. 300 [PMID:25018763] Moubayidin L,Ostergaard L Dynamic control of auxin distribution imposes a bilateral-to-radial symmetry switch during gynoecium development. Curr. Biol., 2014. 24(22): p. 2743-8 [PMID:25455035] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776] Zumajo-Cardona C,Ambrose BA,Pabón-Mora N Evolution of the SPATULA/ALCATRAZ gene lineage and expression analyses in the basal eudicot, Bocconia frutescens L. (Papaveraceae). Evodevo, 2017. 8: p. 5 [PMID:28331573] Reyes-Olalde JI, et al. The bHLH transcription factor SPATULA enables cytokinin signaling, and both activate auxin biosynthesis and transport genes at the medial domain of the gynoecium. PLoS Genet., 2017. 13(4): p. e1006726 [PMID:28388635] Wu M, et al. SPATULA regulates floral transition and photomorphogenesis in a PHYTOCHROME B-dependent manner in Arabidopsis. Biochem. Biophys. Res. Commun., 2018. 503(4): p. 2380-2385 [PMID:29966653]