PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027741.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 358aa    MW: 39552.6 Da    PI: 9.7647
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027741.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986.2e-31286343359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d  ++++tYegeHnh+
  CCG027741.1 286 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDSMMLIVTYEGEHNHS 343
                  99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.0E-16236282IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.805.8E-33272345IPR003657WRKY domain
PROSITE profilePS5081131.904279345IPR003657WRKY domain
SuperFamilySSF1182907.45E-27282345IPR003657WRKY domain
SMARTSM007741.3E-37284344IPR003657WRKY domain
PfamPF031061.5E-26286342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAVELMMGYS GDCFATKMQE NAVREAAASG IQSVEEVIKL LKQNQLEQQH YQELSAASSS  60
SNLGTDNIMT VTDMAVNNFK KVISLLGRTT RTGHARFRRA PDTPPTQQQI QEEPESQQEK  120
RQVQEPGPSV RAINSQPTEQ ASAFRVYQPT PIHRLPPLPH NQQQKSPLLV TKKGLSDRNE  180
IPTRINFSNS PSISSATSFM SSLTGETDSF QRSMSSGFHF TQPSAGKPPL SSSSLKRQCN  240
SMDDAALKCG SSSGRCHCSK KSRKSRAKRV VRVPAISNKM ADIPPDDYSW RKYGQKPIKG  300
SPHPRGYYKC SSVRGCPARK HVERALDDSM MLIVTYEGEH NHSLPFDDAP AALVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-23272345274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774340.0GQ377434.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017161.10.0PREDICTED: probable WRKY transcription factor 7 isoform X1
SwissprotQ9STX01e-115WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLB9GNT70.0B9GNT7_POPTR; Uncharacterized protein
STRINGPOPTR_0002s12480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.14e-99WRKY DNA-binding protein 7