PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027670.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRF
Protein Properties Length: 592aa    MW: 64417.3 Da    PI: 7.1955
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027670.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.11.7e-24219263145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  CCG027670.1 219 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 263
                  79****************************************985 PP
2QLQ55.41.8e-19147182237
          QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                  +FT  Q+++L++Q+l+yKy+ an+P+P++Ll +i+k
  CCG027670.1 147 PFTQLQWMELEHQALIYKYITANVPIPSNLLIPIRK 182
                  8*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.6E-10146182IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.165147182IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.4E-14147181IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663219263IPR014977WRC domain
PfamPF088797.0E-21220262IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MDFGVQMGLD GLVDSDTSNS GFASLASSDP EAKKYGSGFL KQERSAAADD DWWNSKLSIT  60
ESMLLDQRNT LLLKSSNNSL FTAGQQQQQM LSFSCPKSAS SAERSYPNAI LPYFHLTSSS  120
HNRNTGYNSG IFNAASMHGV LTETRWPFTQ LQWMELEHQA LIYKYITANV PIPSNLLIPI  180
RKALDSAGFS SFSGLFKPSA CANTVQWGTF HMGFSSNTDP EPGRCRRTDG KKWRCSRDAV  240
ADQKYCERHM NRGRHRSRKP VEGQSGHSAV ATTTLKPMAN GTSSFASASV VGLRSSVSDS  300
HAIVHNQQQP ASSSNLSATS TLSRVFFTTE NVGERMQDAS GLSMLPSSID LKSKETTFVI  360
SKQQNSYVES LQNEFALVTS DSLLNHSQKS SSVMSSRNFD SSQDLTDQES VSQHSLRQFM  420
DDCPKSHSDR SAVAWPGLDL QSERTQLSIS IPMAPADFMS STSSPNNEKI SLSPLRLSRE  480
FDPIQMGLGV GVGSVANEPN QRQANWIPIS WETSMGGPLG EVLHSTNNNA TAECKNESSL  540
NLMTERRDNS PRVGSSPTGV LQKSAFASVS NSSAGSSPRA ENKTIEGGQS LQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4733681e-56AM473368.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X262323.6, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017084.10.0PREDICTED: growth-regulating factor 1-like isoform X1
TrEMBLA0A1P8SN450.0A0A1P8SN45_9ROSI; GRF1/2d
STRINGPOPTR_0002s11590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-102growth-regulating factor 1