PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG027653.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TALE | ||||||||
Protein Properties | Length: 368aa MW: 42431.4 Da PI: 6.3824 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.2 | 3.2e-09 | 295 | 330 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+ +gL+++q+ +WF N+R ++ CCG027653.1 295 YKWPYPSETEKVALAETTGLDQKQINNWFINQRKRH 330 5679*****************************885 PP | |||||||
2 | ELK | 38.1 | 3.2e-13 | 250 | 271 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyLgsLkqE+s CCG027653.1 250 ELKNHLLRKYSGYLGSLKQELS 271 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.6E-19 | 106 | 150 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.5E-22 | 107 | 149 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.5E-29 | 157 | 208 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.9E-24 | 162 | 207 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 11.243 | 250 | 270 | IPR005539 | ELK domain |
SMART | SM01188 | 3.0E-7 | 250 | 271 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.2E-10 | 250 | 271 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.973 | 270 | 333 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-20 | 271 | 345 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.7E-12 | 272 | 337 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-27 | 275 | 336 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.44E-11 | 282 | 334 | No hit | No description |
Pfam | PF05920 | 1.2E-16 | 290 | 329 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 308 | 331 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MEDYNQMSEN TTPRGNFLYA SQLLAPNSSP YGRTSSGSTV SNQQTQMPLN PFHLQSNDQC 60 FQSDTHPIVK TEASTSHAQK FHYPLLRGYQ TINQQQQGSE SSSEVEAIKA KIIAHSQYSN 120 LLEAYMDCQK VGAPPEVVAR LAAARQEFES RQRSFITSRD NSKDPELDQF MEAYYDMLVK 180 YREELTRPIQ EAMDFMRRIE TQLNMICHGP LRIFNSDDKS EGVGSSEDDQ DNSGGETELP 240 EIDPRAEDRE LKNHLLRKYS GYLGSLKQEL SKKKKKGKLP KEARQKLLSW WELHYKWPYP 300 SETEKVALAE TTGLDQKQIN NWFINQRKRH WKPSEDMQFM VMDGLHPQNA ALYMDGHYMG 360 DGHYRLGP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ807482 | 0.0 | FJ807482.1 Populus trichocarpa KNOX transcription factor (KNOX) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011017056.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 2 | ||||
Swissprot | O04135 | 0.0 | KNAP2_MALDO; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | L0AUU4 | 0.0 | L0AUU4_POPTO; KNAT1 | ||||
STRING | EOY15624 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4584 | 32 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-147 | KNOTTED-like from Arabidopsis thaliana |