PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG027561.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 265aa MW: 27928.8 Da PI: 7.6498 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.3 | 6.5e-32 | 58 | 113 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +++rY+eC+kNhA+ +Ggha+DGCgEfm++ g+egt +alkCaAC+CHRnFHR+e++ CCG027561.1 58 SSIRYRECQKNHAVGIGGHALDGCGEFMAA-GDEGTLDALKCAACNCHRNFHRKESD 113 5789*************************9.999********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.3E-29 | 60 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.6E-29 | 61 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-22 | 61 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.207 | 62 | 111 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.03E-18 | 188 | 263 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-30 | 189 | 264 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.7E-24 | 202 | 258 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MEFDEHEDQE EEMTGMAVMP PGFDSISNSV AARSKMGPAG GGGEGASTTT ANTNTRKSSI 60 RYRECQKNHA VGIGGHALDG CGEFMAAGDE GTLDALKCAA CNCHRNFHRK ESDGGGGGEA 120 ILYHGHHHQQ QPQFSPYYRA PPPTGYLHHL TPTPQSRPLA LPAASGGGGA GAGAGGCSRE 180 EEDVSNPSSS GGGGGGGGSS SKKRYRTKFT QEQKEKTLAF AERLGWGIQK HDEAAVGQFC 240 AETGVKRHVL KVWMHNNKHT LGKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-27 | 201 | 260 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011016887.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 2 | ||||
Swissprot | Q6YXH5 | 2e-75 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | B9GV22 | 1e-137 | B9GV22_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s10330.1 | 1e-138 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-67 | homeobox protein 22 |
Publications ? help Back to Top | |||
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