PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027553.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 325aa    MW: 36670.4 Da    PI: 5.2635
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027553.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13127178155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  CCG027553.1 127 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 178
                  79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.77E-14125182No hitNo description
Gene3DG3DSA:4.10.280.102.4E-13126182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-16126188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-10132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MELEAIVYSQ DPFTYGCKDS CSLAGGGAWD YDFELQEDDK AFLGILENNN MEQQGLHASW  60
DSSSLSLMQQ EKEWDYNSSS PGTCNVDQSL QGILFPAMME PAPVTTTNRR KRRRTKSSKN  120
KEEIENQRMT HIAVERNRRK QMNEYLAVLR SLMPPSYVQR GDQASIIGGA INFVKELEQL  180
LQTMGTNKKN KQQPDDNGFP SRLFAEFFTF PQYSTRASQP SVTADESVAD QNQRALGDIE  240
VTMVESHANL KILSKKRPGQ LLKLMVGLQN LRLSILHLNV TTVDQMILYS VSVKVEEGCH  300
LNTVDEIAAA VNHMLYRIEE GTAFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109113RKRRR
2109114RKRRRT
3127138RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016877.10.0PREDICTED: transcription factor bHLH94
SwissprotQ9C7T43e-90BH096_ARATH; Transcription factor bHLH96
TrEMBLB9GV130.0B9GV13_POPTR; Uncharacterized protein
STRINGPOPTR_0002s10230.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-88bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]