PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027405.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 248aa    MW: 28336.2 Da    PI: 7.0196
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027405.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.5e-1468120155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  ++ +hn+ Er RR++iNs ++ Lr+llP  +   + kKls  ++  ++ +YI +Lq
  CCG027405.1  68 KKLNHNASERDRRKKINSLYSSLRSLLPAsD---GMKKLSIPSTISRVLKYIPELQ 120
                  6789*************************55...8888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.66567119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-1268120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.73E-668124No hitNo description
Gene3DG3DSA:4.10.280.101.8E-1468136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-1568136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-973125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MLEFSPTTLF STFGWPLEEP ISHEQNYSFR DCETPGSFTH IPQPNIRELD RSTSFTAYSG  60
NGDPNMVKKL NHNASERDRR KKINSLYSSL RSLLPASDGM KKLSIPSTIS RVLKYIPELQ  120
QKVERQIQRK EELLSKLSRQ DDLIYQENQR KDTMYSSLSS VSASRLGDRE VVVQISTCKV  180
LKSPISEILL NLEENGLVLI NSSSFESFGG NVFYHLHLQV MEGNCTLECE ALNEKLLSIC  240
TKRETFFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040761.10.0PREDICTED: transcription factor ORG2-like
TrEMBLA0A2K1ZWD11e-160A0A2K1ZWD1_POPTR; Uncharacterized protein
STRINGPOPTR_0016s03680.11e-117(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-60bHLH family protein