PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027404.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 249aa    MW: 28053.8 Da    PI: 9.3968
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027404.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH443.9e-1472124155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++ +hn++Er RR++i+s ++ Lr+llP a   + kKls  +++ +A +Y+ +Lq
  CCG027404.1  72 KKLSHNANERDRRKKIKSLYSSLRSLLPAA--DQMKKLSVPATVSRALKYLPELQ 124
                  6789*************************6..49999**************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.82171123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.36E-572128No hitNo description
SuperFamilySSF474592.22E-1572149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-1372138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-1172124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-977129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MLELSPTTLF STFGWPVEEP TSHEGNYLSF RDSETPESLI TQFPPSQPQI IKLDRSPSFT  60
AYSGSVGPSM VKKLSHNANE RDRRKKIKSL YSSLRSLLPA ADQMKKLSVP ATVSRALKYL  120
PELQQQVERL VQRKEELLSK QGGIIHQENQ RNGTVYSSLS SVSASQLSDK EVVVHISTYK  180
NHKSPLSEIL LTLEEDRLVL KNSSSFESSG DRVFYNLHLQ VMEGTYTLDS EAMRAKLVSL  240
YVKRESSSL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2826511e-162GU282651.1 Populus balsamifera isolate INU03 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826521e-162GU282652.1 Populus balsamifera isolate FRE01 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826541e-162GU282654.1 Populus balsamifera isolate KUU07 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826561e-162GU282656.1 Populus balsamifera isolate MGR10 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826581e-162GU282658.1 Populus balsamifera isolate STO11 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826591e-162GU282659.1 Populus balsamifera isolate STO11 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826601e-162GU282660.1 Populus balsamifera isolate HAY07 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826611e-162GU282661.1 Populus balsamifera isolate HAY07 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826621e-162GU282662.1 Populus balsamifera isolate GIL14 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826631e-162GU282663.1 Populus balsamifera isolate GIL14 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826641e-162GU282664.1 Populus balsamifera isolate LOV02 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826651e-162GU282665.1 Populus balsamifera isolate LOV02 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826661e-162GU282666.1 Populus balsamifera isolate POR11 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826671e-162GU282667.1 Populus balsamifera isolate POR11 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826681e-162GU282668.1 Populus balsamifera isolate RNA13 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826691e-162GU282669.1 Populus balsamifera isolate RNA13 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826701e-162GU282670.1 Populus balsamifera isolate STL13 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826711e-162GU282671.1 Populus balsamifera isolate STL13 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826721e-162GU282672.1 Populus balsamifera isolate WHR03 haplotype A basic helix-loop-helix (bHLH) family protein gene, partial sequence.
GenBankGU2826731e-162GU282673.1 Populus balsamifera isolate WHR03 haplotype B basic helix-loop-helix (bHLH) family protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011040759.10.0PREDICTED: transcription factor ORG2-like isoform X1
TrEMBLA0A2K1ZWD51e-145A0A2K1ZWD5_POPTR; Uncharacterized protein
STRINGPOPTR_0006s03560.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.13e-51bHLH family protein