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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG027383.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 318aa MW: 34232.2 Da PI: 6.8036 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.7 | 8.4e-31 | 114 | 167 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl CCG027383.2 114 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMNVDGLTRENVASHLQKYRL 167 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.298 | 111 | 170 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.58E-20 | 111 | 171 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-31 | 113 | 172 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-24 | 115 | 167 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-8 | 117 | 166 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MREDDSNWFS RWEEELPSLE ELMPLSQTLI TPDLALAFDI TNPSNTTTTT TTNNHNSSLH 60 QNQPLPPPPP PPAAVSPTPA NPLASPQPNS GDFAADSSEL GSGAAGDEPR TLKRPRLVWT 120 PQLHKRFVDA VAHLGIKNAV PKTIMQLMNV DGLTRENVAS HLQKYRLYLK RMQGLSSGGG 180 GGGTGGGGGL TGGTDAATDH LFASSPVPAH FLHPGRPNSD HFLPFVPVAA LQHHHHQQQM 240 AAVGHPQLPS QYHRQMGHFG SPTNGQFEHP FLPRQTQQPV HRMGAPVPNT VPGYVEDLES 300 VNGNGGRKVL TLFPTGDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 8e-33 | 114 | 170 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213414 | 0.0 | AC213414.1 Populus trichocarpa clone POP015-I11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011040735.1 | 0.0 | PREDICTED: transcription factor PCL1-like | ||||
Swissprot | O22210 | 9e-62 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | B9H8R8 | 0.0 | B9H8R8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s03340.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8542 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 4e-94 | G2-like family protein |
Publications ? help Back to Top | |||
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