PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027349.3
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 603aa    MW: 66983.6 Da    PI: 5.3138
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027349.3genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.42.9e-1981431127
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpk...kvkaeekewyfFskrdkkyat.gkrknra..tksgyWkatgkdk 90 
                  l pG+rF Pt+e+l+++yL +kv+g    e++++ik+ +++   ePw++      +k++++ +yfF+k  kk+ +  k  +r+  ++ g+W+   +  
  CCG027349.3   8 LLPGYRFCPTEEQLICYYLYQKVRGGLpSEAATMIKDYNLHGGeEPWEIFDrlaGHKEGDHVLYFFTKLGKKTLNcTKGMSRTvgANGGTWHGG-SVD 104
                  579*********************9983555566*****997549****63233445566677******9999873334455422569***943.333 PP

          NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127
                   v+s+   ++ ++g+++ + + + r+p+ ++ +W++ +y 
  CCG027349.3 105 VVKSRrdnRDIVIGMRRGFLYQNHRRPD-QHGRWILTQYG 143
                  344434546667********99888888.89*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-206158IPR003441NAC domain
PROSITE profilePS5100524.0988159IPR003441NAC domain
PfamPF023651.1E-1310142IPR003441NAC domain
ProDomPD0319141.0E-11548603No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MQNILSRLLP GYRFCPTEEQ LICYYLYQKV RGGLPSEAAT MIKDYNLHGG EEPWEIFDRL  60
AGHKEGDHVL YFFTKLGKKT LNCTKGMSRT VGANGGTWHG GSVDVVKSRR DNRDIVIGMR  120
RGFLYQNHRR PDQHGRWILT QYGSDSISEN VVICKLKISG HGLKESRKRK SMDYSSEVIQ  180
RNINIDAAIN SGPTMAQLTH QEPRRIIQNQ EMWPLVGTVS IEDNGGSSAT GDTFYSIQNM  240
GLEAPAIVNI EPALRFQPQQ ANFIQEPMIS EHQQMAFASF SDNQKVLQSE AVFDGYERSQ  300
NIVESFYEHP IISFEPITPL AEESIIIENE EIMGLATFST EDYFENASAI VNIEPTTTNE  360
NQHMVLASNI NGDEGVCPTG DNAATFEIMG LGMCPTQDSF ETMTSANENQ QMEPASYNGD  420
GGVCPAGDNA VTPEDAAPAV SAIPVMDAGL IEYLKNETNW YPGFASSNFL SVPTFGSIYT  480
LKFMDWYGFS ACRLPIGVLS KSFDGICLST PGGNGLMTVK ALSDSKGTSP DSGQPVSESD  540
DEEEDAVLDK IPLDSKLQLK LEHKMKMKLG KKIRLRSKKL DRKRGMRKRG QWPPSKVNKL  600
KNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mmi_61e-1452560364142plastid ribosomal protein cL37, PSRP5
5mmm_61e-1452560364142plastid ribosomal protein cL37, PSRP5
5x8p_61e-1452560364142protein cL37
5x8t_61e-1452560364142protein cL37
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170SRKRKS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2167630.0AC216763.1 Populus trichocarpa clone POP006-F11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006388809.10.0NAC domain-containing protein 96
TrEMBLA0A2K1ZVY10.0A0A2K1ZVY1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s02930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14731213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.12e-13NAC domain containing protein 52