PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027224.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 279aa    MW: 30465.3 Da    PI: 7.5765
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027224.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.3e-10552245
                     SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwq 45
                     g WT +E++ + +a++++  +     +W++Ia++++  ++l+++k+++ 
      CCG027224.1  5 GTWTRDEEKTFENAIAMHWIDedsneQWEKIASMVP-SKSLEELKLHYK 52
                     78*****************99***************.**********95 PP
2Myb_DNA-binding39.11.8e-12131175347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
      CCG027224.1 131 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 175
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.334258IPR017884SANT domain
SMARTSM007171.6E-6357IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-4552IPR009057Homeodomain-like
PfamPF002494.8E-7552IPR001005SANT/Myb domain
CDDcd001674.50E-8652No hitNo description
SuperFamilySSF466891.65E-8761IPR009057Homeodomain-like
PROSITE profilePS5129417.097124180IPR017930Myb domain
SuperFamilySSF466893.23E-17125181IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-17127178IPR006447Myb domain, plants
SMARTSM007172.3E-10128178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-11129174IPR009057Homeodomain-like
CDDcd001678.16E-10131176No hitNo description
PfamPF002496.6E-11131175IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MASVGTWTRD EEKTFENAIA MHWIDEDSNE QWEKIASMVP SKSLEELKLH YKILVEDVCA  60
IEAGNVPIPN YEGEEAASST KDLHGLSGTM TTVKKLNCGY GSGFVGLGHE SSGHGSKGAS  120
RSEQERKKGI PWTEEEHRLF LLGLDKFGKG DWRSISRNFV ISRTPTQVAS HAQKYFIRLN  180
SMNRDRRRSS IHDITSLNNG DVSSHQAPIT GQQVNTSPAG SAPAMGPPVK HRTQAHMPGL  240
AMYGPPLGHP VAHPPVHMAS AVGTPVMLPP PVHHPHPPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-137711173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009785.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN67e-79SRM1_ARATH; Transcription factor SRM1
TrEMBLU5FTN20.0U5FTN2_POPTR; Uncharacterized protein
STRINGPOPTR_0012s05720.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106943340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.12e-77MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]