PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

CCG027164.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 257aa MW: 29938.7 Da PI: 5.0577

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG027164.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.2	3.2e-24	78	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY ++++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ ++++ + ++tr gC+a+l++ +++ +w+vtk+ eHnHel+ CCG027164.2 78 EFYIAHGRRTGFTVRIHHNRRSRINNMVIGQDFVCSKEGFREKKYVYRKDR-VlpPPPVTREGCQAMLRIALKDGITWVVTKFIAEHNHELM 168 69***************************************99883333.234899******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-21	78	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MDSTSKQAFD LDETESCFVV ENYGENEFVD DELSENIELC LDEVDKIIEQ SSETSGSIND 60 AMEPCTGMEF KSRDDAREFY IAHGRRTGFT VRIHHNRRSR INNMVIGQDF VCSKEGFREK 120 KYVYRKDRVL PPPPVTREGC QAMLRIALKD GITWVVTKFI AEHNHELMSP SKVPWRGSAK 180 SLVSEDEKDR RIRELTIELN NEKQRCKRRC AAYQEQLRMV LSYVEEHTIH LSNKVQDIVN 240 NVKELENDME DSDCKYV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011024735.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	B9GNH4	0.0	B9GNH4_POPTR; Uncharacterized protein
STRING	POPTR_0002s24030.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-38	FAR1 family protein