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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG027109.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 281aa MW: 31620 Da PI: 9.9985 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.5 | 1.2e-11 | 158 | 199 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa+++++a+ CCG027109.2 158 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 199 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 8.597 | 131 | 212 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.5E-6 | 157 | 200 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-4 | 157 | 214 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-8 | 158 | 202 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-6 | 160 | 204 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MVSLRRRKLL GLCAGRSSFL TPLPRFFDNG TATLGSAQNG RSVSVHPLPS DDAIQPEEGC 60 MVSIYEFKEK KTILKVGAGS SNVSASSSSK EQRSQPYPDS MGATPPTGSY ALETISIYRL 120 IPFLWMYLMV AIQGLEQPVK RRKRHRRKHV QNQEPCLMRG VYFKNMKWQA AIKVDKKQIH 180 LGTVGSQEEA ARLYDRAAFM CGREPNFELS EEEKQELRKF KWDEFLAITR SAINNKKHKR 240 RIGAGLQKRS ETTLQDGDWD AKDGLNGFSA SEDVEPDSSA S |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011024614.1 | 1e-144 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_011024615.1 | 1e-144 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_011024616.1 | 1e-144 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_011024617.1 | 1e-144 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_011024618.1 | 1e-144 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_011024619.1 | 1e-144 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | B9GQL7 | 1e-137 | B9GQL7_POPTR; ERF family protein | ||||
STRING | POPTR_0002s24750.4 | 1e-138 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5457 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 5e-49 | ERF family protein |