PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG027089.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 563aa MW: 61263.4 Da PI: 6.248

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG027089.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.8e-09	368	415	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq CCG027089.1 368 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 415 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.85E-17	362	433	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.50E-10	362	419	No hit	No description
PROSITE profile	PS50888	15.663	364	414	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	364	432	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-6	368	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	370	420	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
MESEYFFNAG VPPQALLFEP TSTSSSMPIW QSLSSPMEMQ DNCSARRLFN SSWEKSTDHS 60 PPFESSLSSL VSSPGVSNCN VSSESFMVRE LIGKLGNIDN SNNLGEISPH SQPMLAASYI 120 TAANNSANTS CYTTPLNSPP KLKMPVMDQF SKEHLNIPGL GKPMGLNSSV AEFTADPGFA 180 ERAAKFSCFG SRSFNGRISQ LGLNNAEMAN GCNPLIGNGK LARVASSPLL KAVGSQKGNK 240 STPLQDRSEL TNSQESSVSE QIPSGEAGLK ASNELNSRKR KALSKGKAKQ SASNPPANAT 300 KDAETDDNSN TKRIKPNEGE ENENGPVKAE EEPKGSGDDI QNKANSKPPE PPKDYIHVRA 360 RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK ALMLDEIINY VQSLQRQVEF 420 LSMKLASVNT RLDFNVDTLI SKDMFQSSQP LPHPIFPLDS SEPAAIFSHQ QQQNPPLHSN 480 ISNGAVTHCS VDPLDTTGLC QNLNAQLPPL DGFTQNAHQY PTFCEDDLQT IVQMGYGQNP 540 NLETFLPQNF HGSNQVSHMK IEL

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

MESEYFFNAG VPPQALLFEP TSTSSSMPIW QSLSSPMEMQ DNCSARRLFN SSWEKSTDHS  60
PPFESSLSSL VSSPGVSNCN VSSESFMVRE LIGKLGNIDN SNNLGEISPH SQPMLAASYI  120
TAANNSANTS CYTTPLNSPP KLKMPVMDQF SKEHLNIPGL GKPMGLNSSV AEFTADPGFA  180
ERAAKFSCFG SRSFNGRISQ LGLNNAEMAN GCNPLIGNGK LARVASSPLL KAVGSQKGNK  240
STPLQDRSEL TNSQESSVSE QIPSGEAGLK ASNELNSRKR KALSKGKAKQ SASNPPANAT  300
KDAETDDNSN TKRIKPNEGE ENENGPVKAE EEPKGSGDDI QNKANSKPPE PPKDYIHVRA  360
RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK ALMLDEIINY VQSLQRQVEF  420
LSMKLASVNT RLDFNVDTLI SKDMFQSSQP LPHPIFPLDS SEPAAIFSHQ QQQNPPLHSN  480
ISNGAVTHCS VDPLDTTGLC QNLNAQLPPL DGFTQNAHQY PTFCEDDLQT IVQMGYGQNP  540
NLETFLPQNF HGSNQVSHMK IEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011024588.1	0.0	PREDICTED: transcription factor bHLH62
TrEMBL	B9GQN9	0.0	B9GQN9_POPTR; Uncharacterized protein
STRING	POPTR_0002s24990.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2530	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-114	bHLH family protein