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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG027047.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 572aa MW: 62761.6 Da PI: 6.0381 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.1 | 9.8e-16 | 332 | 378 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq CCG027047.3 332 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 378 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.52E-17 | 324 | 382 | No hit | No description |
SuperFamily | SSF47459 | 8.9E-21 | 325 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.044 | 328 | 377 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-13 | 332 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.2E-21 | 332 | 389 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-17 | 334 | 383 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MNPYVPDFEM DDDYSLPPPP STHTRPRKTA MQEEEIMELL WQNGQVVMHS QRSQKKSSSP 60 LSKLDDAVLP ADQLPGTKEI RSSHDQQQEH HHLFMQEDEM ASWLNHPLND TNFDHDFCAD 120 LLYPPTASTV SITREAAVTK AAASPVRGAT QRTEARSYPA VYATVSAPRP PIPPGRRGEG 180 VAQNFAYFSR HRAGGVSESG PSNSKSVVRE STVVDSCETP TARISETPFA RSADNTCGTM 240 NCTAVAGTVS SAPSSNREMV TNPCEMTSTS SPDCSSASAE PPALMSPVED RKRKGREEEA 300 ECHSEDAEFE SADAKKQIRG SMSSKRSRAA EVHNLSERRR RDRINEKMRA LQELIPRCNK 360 SDKASMLDEA IEYLKSLQLQ VQMMSMGCSM VPMMFPGFQQ YMPPMGIGMG MGMEMGLSRP 420 MMPFPNILAG ASSATPVAAA HLVPGFSVPP FHVPPIPAPD PSRVEPTSQL DPMLGSPGQQ 480 NPNQPRVPNF VDPYQHYLGL YQMHLPGVAQ NQAMAQPSTS KPSTSRGAEN LGNHQSDSIQ 540 ELHERIALGE ILNVVNLFLN RHDMLIIESL VG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 336 | 341 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC297695 | 0.0 | KC297695.1 Populus tomentosa PIL gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011024540.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: transcription factor PIF1 | ||||
TrEMBL | A0A2K2BPB4 | 0.0 | A0A2K2BPB4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s25410.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4607 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.3 | 2e-68 | phytochrome interacting factor 3-like 5 |