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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG026924.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 228aa MW: 25872.4 Da PI: 10.1647 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 63.6 | 6.3e-20 | 11 | 74 | 66 | 128 |
NAM 66 kkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ky+ g r+nra++sgyWkatg++k ++++ +++++g+kk Lvf kgr pkg k W+mheyrl CCG026924.1 11 RKYPIGARPNRAAASGYWKATGTNKLIINScGTTKIGVKKALVFCKGRPPKGMKIGWIMHEYRL 74 7999***********************99978889***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 29.229 | 1 | 100 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.58E-26 | 11 | 100 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-9 | 19 | 74 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MNGISLRQGI RKYPIGARPN RAAASGYWKA TGTNKLIINS CGTTKIGVKK ALVFCKGRPP 60 KGMKIGWIMH EYRLLDAWNN SKRKGSMRLD DWVLCRVRQK NSIPRSTWED QNVPSSAPPG 120 FFPRDFPSTE RVSSINFPST DKSSTSLGNL LNSLKRKHVE RDQQRENCFP RSKKLRTKAD 180 MEEEGVLSIG NDGTDENLCG MPDQSESSCF SPVQWNPLVQ YQEYNHFE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-31 | 11 | 102 | 81 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-31 | 11 | 102 | 81 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-31 | 11 | 102 | 81 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-31 | 11 | 102 | 81 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-31 | 11 | 102 | 84 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-31 | 11 | 102 | 84 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-31 | 11 | 102 | 84 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-31 | 11 | 102 | 84 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-31 | 11 | 102 | 84 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-31 | 11 | 102 | 84 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-31 | 11 | 102 | 84 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-31 | 11 | 102 | 84 | 170 | NAC domain-containing protein 19 |
4dul_A | 4e-31 | 11 | 102 | 81 | 167 | NAC domain-containing protein 19 |
4dul_B | 4e-31 | 11 | 102 | 81 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024443774.1 | 1e-148 | NAC domain-containing protein 83 | ||||
TrEMBL | A0A3N7G5A9 | 1e-148 | A0A3N7G5A9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s08970.1 | 1e-141 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2416 | 29 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 4e-38 | NAC-like, activated by AP3/PI |