PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026872.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 676aa    MW: 75895.6 Da    PI: 10.4733
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026872.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.4e-111565347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47
                     +WTt E++ll++av+++G+++W++Ia ++         +t  +c+++++++
      CCG026872.1 15 PWTTLEELLLACAVNRHGSDSWDSIAMEVSnrtstfSSLTSQNCIDKFNDL 65
                     8*****************************777777677777777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-6648IPR009057Homeodomain-like
SuperFamilySSF466893.67E-71288IPR009057Homeodomain-like
SMARTSM007171.0E-61268IPR001005SANT/Myb domain
PROSITE profilePS500906.3771466IPR017877Myb-like domain
PfamPF002492.2E-101565IPR001005SANT/Myb domain
CDDcd001676.93E-61666No hitNo description
SMARTSM002976.7E-12125430IPR001487Bromodomain
SuperFamilySSF473705.89E-17328431IPR001487Bromodomain
CDDcd043691.71E-13333425No hitNo description
Gene3DG3DSA:1.20.920.106.9E-14334432IPR001487Bromodomain
PfamPF004391.3E-9339410IPR001487Bromodomain
PROSITE profilePS5001411.933340411IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MAKQQQQQQP SPPSPWTTLE ELLLACAVNR HGSDSWDSIA MEVSNRTSTF SSLTSQNCID  60
KFNDLKRRFG FTSLRNDTAS SLVDELRKLR VDELRREVHR RDASIVSLEM KVKRLEEDRE  120
RSLKEMEKSS DLAKPSLEIV AGKSDGGEES GDGDERSFNE SNSTSQQPQK AEAETEKEQN  180
AITELKPEPD VIREDPEPSR LGSDPEPERE WSHNGKLEDD DDKKPKKEMK IERLSRESGL  240
GPDSNELGES VGESKREDKE KDNIKQINNN NNNNNNNNNS DVQSSVSLSM RKKKRRRSSE  300
EGCSSGEEER GGGDDEVSPA RKKVSAVKSE PWLKLLGIIR SHRLSSVFEK RLRSQESERY  360
RMLVRQHMDL QMIQSRLNKG VYSNCFQKFF KDLLILLNNA IVFFRKNSPE NLAANELRAV  420
VLKEVKEKLR KPKPRPVAAK PATEQHSAAL SKPNKSSSST LVACSKHGSM KAISGGAGKK  480
GDKEMKGKHK VNEKKVEVSI DRIEEKGLKK KTTKERSVSG RRNSKTSNKN GEIKHQYGGN  540
ELSSHDALGI KVDRKEHTGR KKQGAASFLR RMKQNSPSRV TEEDSSSSPS SSEDESRDSR  600
KQDKKRRGRE ADGISKRITR SSRGRGPGED SRNIKRGRPP KKQMESGSGT GKRGRDNEDS  660
GVGVGGGGRV KKRSRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289296MRKKKRRR
2290296RKKKRRR
3291296KKKRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164540.0AC216454.1 Populus trichocarpa clone POP028-J04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037914.10.0PREDICTED: MATH and LRR domain-containing protein PFE0570w-like
TrEMBLA0A2K2BAG10.0A0A2K2BAG1_POPTR; Uncharacterized protein
STRINGcassava4.1_002976m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.12e-54DNA-binding bromodomain-containing protein