PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG026704.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 268aa MW: 30010 Da PI: 5.9574 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.4 | 1.9e-30 | 75 | 133 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++itY+ eHnh+ CCG026704.1 75 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSKVDPSMLVITYSCEHNHP 133 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 31.846 | 69 | 135 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-31 | 70 | 135 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-26 | 71 | 135 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-35 | 74 | 134 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.8E-26 | 76 | 133 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MDSRFNINPL ITEQEENDNS AQESGPESPP SNDMKMPSTS SPKRSKKAMQ KRVVSVPIKE 60 LEGSRLKGEN ASPPSDSWAW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK QVERSKVDPS 120 MLVITYSCEH NHPWPPPSRS HNHHKNHHNS SSPKHNTTTK PEVSTTHPDN PEPEHEERFT 180 DLGNDGSLIS TTTTSDEFSW FGEIETTSST ILETPFFAEG EADADMASMF FPMRDEDESL 240 FADLGELPEC SSVFRHQRSG VGPQVQIC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 3e-21 | 51 | 135 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 3e-21 | 51 | 135 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00167 | DAP | Transfer from AT1G29280 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377428 | 0.0 | GQ377428.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 8 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011039390.1 | 0.0 | PREDICTED: probable WRKY transcription factor 65 | ||||
Swissprot | Q9LP56 | 1e-88 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | B9I1H9 | 0.0 | B9I1H9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s06990.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2770 | 34 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 8e-79 | WRKY DNA-binding protein 65 |
Publications ? help Back to Top | |||
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