PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026666.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 78aa    MW: 8868.96 Da    PI: 8.9544
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026666.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-09851344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a +++ ++   +W+ +a+ +g g++++++k ++
      CCG026666.1  8 SWTPKQNKLFEKALALYDKDtpdRWHNVAKAVG-GKSAEEVKMHY 51
                     6********************************.********999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.23459IPR017884SANT domain
SMARTSM007172.8E-8557IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-4761IPR009057Homeodomain-like
PfamPF002492.0E-7851IPR001005SANT/Myb domain
SuperFamilySSF466897.57E-13863IPR009057Homeodomain-like
CDDcd001675.87E-7851No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MSSNSLTSWT PKQNKLFEKA LALYDKDTPD RWHNVAKAVG GKSAEEVKMH YEILIKDVRE  60
IESGRVPFPN YWSSGNGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-309751177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016702.11e-52PREDICTED: protein RADIALIS-like 3
RefseqXP_011025809.11e-52PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN06e-35RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLB9HF153e-48B9HF15_POPTR; Uncharacterized protein
STRINGPOPTR_0007s13000.16e-49(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.29e-36RAD-like 6