PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG026547.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 509aa MW: 56520.3 Da PI: 6.1071

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG026547.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.1	8.5e-07	275	296	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H CCG026547.1 275 FCTICGKGFKRDANLRMHMRGH 296 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.25E-5	272	299	No hit	No description
PROSITE profile	PS50157	12.03	274	301	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0026	274	296	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.2E-6	275	325	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	276	296	IPR007087	Zinc finger, C2H2
SMART	SM00355	56	323	356	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	24	361	383	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010044	Biological Process	response to aluminum ion
GO:0010447	Biological Process	response to acidic pH
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 509 aa Download sequence Send to blast
MEPKDRLSLD AWANPSSSSN GLPRKMALEN PSFTNFNLRQ QEQKWDDTSI LDYGIRIEPP 60 FQEFNQASES EYLLSSNCNK QPKVLDQEDG QDNEALQTSK LQDWDPRSML NNLSFLEEKI 120 HHLRDLVHLI VGRKGQALGG QDQLVTQQQQ LITADLTSII VQLISTAGSL LPSVKHTLST 180 GTPNGQFGQL GGLLFPPLAG MNCVPQPQHG SGSKVSDQCN QMDVTGNCGT EQNHSTEELE 240 MKEEEDADEG ENLPPGSYDI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY 300 KTPAALAKPN KEPSSEPVII KRYSCPFAGC KRNKDHKKFQ PLKTILCVKN HYKRTHCDKS 360 YICSRCNTKK FSVMADLKTH EKHCGKDKWL CSCGTTFSRK DKLFGHIALF QGHTPAIPLE 420 ETKGPHASCD KVDGNEASNK GGNTNFSLGF NAGSGSGVQN VIEVKEDADD PASYFSPLSF 480 DTCNFGGFHE FPRPPFDDSE SPFSFLEAP

Sequence ? help Back to Top

Protein Sequence Length: 509 aa Download sequence Send to blast

MEPKDRLSLD AWANPSSSSN GLPRKMALEN PSFTNFNLRQ QEQKWDDTSI LDYGIRIEPP  60
FQEFNQASES EYLLSSNCNK QPKVLDQEDG QDNEALQTSK LQDWDPRSML NNLSFLEEKI  120
HHLRDLVHLI VGRKGQALGG QDQLVTQQQQ LITADLTSII VQLISTAGSL LPSVKHTLST  180
GTPNGQFGQL GGLLFPPLAG MNCVPQPQHG SGSKVSDQCN QMDVTGNCGT EQNHSTEELE  240
MKEEEDADEG ENLPPGSYDI LQLEKEEILA PHTHFCTICG KGFKRDANLR MHMRGHGDEY  300
KTPAALAKPN KEPSSEPVII KRYSCPFAGC KRNKDHKKFQ PLKTILCVKN HYKRTHCDKS  360
YICSRCNTKK FSVMADLKTH EKHCGKDKWL CSCGTTFSRK DKLFGHIALF QGHTPAIPLE  420
ETKGPHASCD KVDGNEASNK GGNTNFSLGF NAGSGSGVQN VIEVKEDADD PASYFSPLSF  480
DTCNFGGFHE FPRPPFDDSE SPFSFLEAP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00196	ampDAP	Transfer from AT1G34370	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB811778	0.0	AB811778.1 Populus nigra PnSTOP1 mRNA for STOP1-like protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011038155.1	0.0	PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
Swissprot	Q9C8N5	0.0	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	B9MW64	0.0	B9MW64_POPTR; Uncharacterized protein
STRING	POPTR_0013s11900.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5340	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	0.0	C2H2 family protein

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]