PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026504.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-other
Protein Properties Length: 1671aa    MW: 182199 Da    PI: 8.0901
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026504.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox19.81.4e-0675131157
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  +r+R  ++++ ++ ++e+F  +  +s++e +e++++ g t +qV+ +F  +R++ +k
  CCG026504.1  75 KRPRDLINPKAVKYMQEVFSIKDAISKKESREISAQFGATVTQVRDFFASQRMRVRK 131
                  799***************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-663131IPR009057Homeodomain-like
PROSITE profilePS5007110.31772132IPR001356Homeobox domain
SMARTSM003891.3E-474136IPR001356Homeobox domain
SuperFamilySSF466891.2E-674135IPR009057Homeodomain-like
CDDcd000862.76E-575131No hitNo description
SuperFamilySSF476761.54E-5333425IPR017923Transcription factor IIS, N-terminal
Gene3DG3DSA:1.20.930.101.9E-4333425IPR017923Transcription factor IIS, N-terminal
TIGRFAMsTIGR012971.2E-8212501555IPR002524Cation efflux protein
SuperFamilySSF1611113.14E-4612521346No hitNo description
Gene3DG3DSA:1.20.1510.101.4E-4512521473IPR027469Cation efflux protein transmembrane domain
PfamPF015454.0E-4412541474IPR002524Cation efflux protein
SuperFamilySSF1611113.14E-4613751475No hitNo description
Gene3DG3DSA:3.30.70.13503.6E-2614751556IPR027470Cation efflux protein, cytoplasmic domain
SuperFamilySSF1602402.62E-2014781556No hitNo description
PfamPF169163.1E-2414791556IPR027470Cation efflux protein, cytoplasmic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0006812Biological Processcation transport
GO:0055085Biological Processtransmembrane transport
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0008324Molecular Functioncation transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 1671 aa     Download sequence    Send to blast
MRSCAGTSKI ETAPVFEFDN GGFDRDRDWE LCRIVSKVFG FAERAFSQPN RSSSKNCCYS  60
MQTHRRQSSF SRNGKRPRDL INPKAVKYMQ EVFSIKDAIS KKESREISAQ FGATVTQVRD  120
FFASQRMRVR KLVRLSREKA IRVNAHKGPQ GPQDGVPTTS DALMPVDLVP LNSVAPNPVP  180
MNSVSPNPAS LNAVIPNPFY LNSVAPNPVP LNFASPSSAP LNFASPTSSP LNSASPNPVP  240
LISVSPNPVP LNPASLNPVP LDSAAQDPVP LNAVGPSRVD EVPSCSTQDD VLPGLDELDK  300
HFAEKIFDLL RKEETFSGQV KLMEWILQIQ TPAVLNWFLV KGGVMILATW LSQAAAEEQT  360
SVLLVTLKVF CHLPLHKAPP EHMSAVLHSV NGLRFYRTPD ISNRARVLLS KWSKLFAKSQ  420
AIKKPNGIKS STDAQDMILK QSIDEIMGNE SWQCDIGNPD GVLALSSESS ENIRKIESSQ  480
ALKLLPASTD DLSRKHILGT SSSPRKSFDA TWASQFSYLD KLIWLPFVDI LNTRIFVVWP  540
VSGSFGGGNG GELELVTDTR ERRKVQLVEQ PGQKTAGRSL QATKAASVNQ GRPMSADDIQ  600
KAKMRALFMQ NKHGKTGSSS NGSTGVKNGG RNKPSSMTTS LCPVSKIHIR PKIEEYKKLV  660
TPPPQVSSKV EGFLDLKKEI NSKEPMGGVS SKVQIPWQTP PEIKLSVLWR VGTGENSKEV  720
DVQKNRNRRE IETIYQTVQQ IPSNPKEPWD LEMDYDDSLT PEIPIEQPPD ADVAETQVSH  780
TEHVNTVVAS APSLSQVGGG SATEPDLELL AVLLKNPELV FALTSGQAGN LSSEETVKLL  840
DMIKTGGAVL AGLNGLGGKV EEKVEVSLPS PTPSSNNPGT SGWRSEFAKN PFSQQASMGN  900
RVVYSDPGVP TSVPLAEKHT SLVQHQNQAT SIRIPQQQAS IPLLSQHVSA VMNPFSLPQT  960
SSIVPENRQP SIVLPANQSY PSNSSMLQTP SSEMVSTMKI LPVNTPPLLN LSAAMNNIKS  1020
TTSVSFTSNP QETRLVPFPP STSTIPTQLQ SQPAQINEPP IVYSTRPHTG DVGPVADSRR  1080
VRQGLVSNSP SQVNQTNYVS SFGGPVQPSL RSGPPWERNE YVGDAGDEGY ESWSPENRRY  1140
ESQEYMPGRN YSGPRSRMNS GWDYMPNNNN NRSRQRNSSG HGDRRHTSAT SSACASFLLQ  1200
PPFNSHYQVN NNNRYNNPPP FIIHRRWHFG HSHAHHSDHH HRPSPGEQSE SIFRLGLAAD  1260
IGLAAGKAFT GYLSGSTAII ADAAHSVSDV VLSGIALWSF KAGMAPKDKE HPYGHGKFET  1320
LGALGISCML LATAGGIAWH ALDLLLGLLT AVPEVANHPL THEHVHNHLQ GGHHHGVDMD  1380
HPILALSMTI VSISVKEGLF WITKRAGERQ GSGLMKANAW HHRADAISSV VALIGVGGAI  1440
LGVKFLDPLA GLVVSSMILK AGLESGYQSV LELVDAAIPE EDLYPIKQTI LQVQGVQGCH  1500
RLRGRRAGSS LYLDVHIVVD PFLSVSAAHE IGENVRQEIH NSHPGIAEVF IHIDPAYLCI  1560
SPTMMDQEEN LNGKGNQNKK ISLDDKDIEL IVSGVFSSKI PEKIEVERIT RHLMQGNILL  1620
QIEISMRPSI LIRDAMELAG EAEKEILKAS SSIIQVGFLL RLGRSHPQVC Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3h90_A3e-261267155520279Ferrous-iron efflux pump fieF
3h90_B3e-261267155520279Ferrous-iron efflux pump fieF
3h90_C3e-261267155520279Ferrous-iron efflux pump fieF
3h90_D3e-261267155520279Ferrous-iron efflux pump fieF
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009535.10.0PREDICTED: homeobox protein LUMINIDEPENDENS-like
TrEMBLA0A1R3H0F20.0A0A1R3H0F2_COCAP; Uncharacterized protein
STRINGPOPTR_0014s12730.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.29e-96HB-other family protein