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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG026290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 150aa MW: 17136.6 Da PI: 7.9168 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 98.3 | 1.1e-30 | 5 | 123 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat.gk.dkevlsk. 95 lppGfrF P+deelvv++L++k++ +++ +vi+++d++ ++Pw+L+ k+ +e k++yf+s+r +nr+t++g Wk g+ ++++l++ CCG026290.1 5 LPPGFRFCPSDEELVVHFLHRKAALLPCHP-DVIPDLDLHPYDPWELDGKALSEGKQCYFYSRRT--------QNRITSNGCWKPMvGHvEEPILASe 93 79*************************999.99**************977778899******984........589********65144577888776 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kk ++fy a +g kt+W+m+ey l CCG026290.1 94 NNKLVGIKKYFIFY---AAEGIKTNWIMEEYLL 123 8888**********...899***********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-37 | 3 | 130 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.93 | 5 | 146 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.6E-20 | 6 | 122 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MAANLPPGFR FCPSDEELVV HFLHRKAALL PCHPDVIPDL DLHPYDPWEL DGKALSEGKQ 60 CYFYSRRTQN RITSNGCWKP MVGHVEEPIL ASENNKLVGI KKYFIFYAAE GIKTNWIMEE 120 YLLSEHCTSH GSSPSTKSSK TRARSKQVRE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-28 | 4 | 133 | 19 | 155 | NAC domain-containing protein 19 |
3swm_B | 1e-28 | 4 | 133 | 19 | 155 | NAC domain-containing protein 19 |
3swm_C | 1e-28 | 4 | 133 | 19 | 155 | NAC domain-containing protein 19 |
3swm_D | 1e-28 | 4 | 133 | 19 | 155 | NAC domain-containing protein 19 |
3swp_A | 1e-28 | 4 | 133 | 19 | 155 | NAC domain-containing protein 19 |
3swp_B | 1e-28 | 4 | 133 | 19 | 155 | NAC domain-containing protein 19 |
3swp_C | 1e-28 | 4 | 133 | 19 | 155 | NAC domain-containing protein 19 |
3swp_D | 1e-28 | 4 | 133 | 19 | 155 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB970796 | 0.0 | AB970796.1 Populus tremula x Populus tremuloides PtxtNAC161 mRNA for NAC transcriptional factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011004987.1 | 1e-108 | PREDICTED: NAC transcription factor ONAC010 | ||||
Swissprot | Q8GWK6 | 7e-55 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A0E4FJJ7 | 1e-101 | A0A0E4FJJ7_POPPZ; NAC transcriptional factor | ||||
STRING | POPTR_0003s01720.1 | 7e-96 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 9e-57 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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