PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026244.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 1106aa    MW: 123630 Da    PI: 6.573
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026244.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.4e-23126227199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ +sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++ +l
  CCG026244.2 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEKSQL 220
                  99*****************************9445444.38************************************************..4567778 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  CCG026244.2 221 LLGIRRA 227
                  9999997 PP
2Auxin_resp124.66.8e-41252334183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F+++YnPras+seFv++++k++kal+++vs+GmRf+m+fete+s  rr++Gt++g+sd+dpvrW+nS+Wr+L+
  CCG026244.2 252 AAHAAANNSPFTIFYNPRASPSEFVIPFSKYNKALYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDPVRWKNSQWRNLQ 334
                  79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-44116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-42118241IPR015300DNA-binding pseudobarrel domain
CDDcd100175.29E-20125226No hitNo description
PROSITE profilePS5086312.407126228IPR003340B3 DNA binding domain
PfamPF023622.3E-21126227IPR003340B3 DNA binding domain
SMARTSM010192.7E-24126228IPR003340B3 DNA binding domain
PfamPF065076.7E-36252334IPR010525Auxin response factor
PfamPF023092.9E-109731065IPR033389AUX/IAA domain
SuperFamilySSF542771.32E-89791057No hitNo description
PROSITE profilePS5174525.0929791072IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1106 aa     Download sequence    Send to blast
MKVPSNGFLP NFADGERKCI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
NDFIPSYPNL PSKLICMLHN VTLHADVETD EVYAQMTLQP VSKYEKEALL ASDMGLKQNR  120
QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDNSWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPFS KYNKALYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDM DPVRWKNSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP  360
FYICPPPFFR PKFPKQPGMP DDDSDIENAF KRAMPWLGDE FGMKDPPSSI FPGLSLVQWM  420
SMQQNNQFPA AQSGLFPSMA PSNALHNNLS TDDPSKVLNF QSPGISPPSV QLNKTNPQNQ  480
GGQLPQPPMA WAQQQQLQQL LQTPINQQQP PYPQQQQQQQ PISQQQQQHQ HWPQQQPQVQ  540
PTQIRQPPPQ IQQQQQIFQP PTLNDSVVAP NQIPNQNLQQ PVVYSQLQQQ QLVASNTQSQ  600
SIPSANISSY PLTSLPQDSQ LHQQMEQQSN LSQRQQQHAQ LQQSPLLLMQ QNLSQRAQPQ  660
QQLQQLSQSS HSEQQLHFQL LQKLQQHQQL PSPASSVLQS QQLQQQHQQT HQPHQQLQQS  720
PLSQNQQPLG SNSFSTATLM RTQSFPMNQP QGLQKQPLAV RAHSSITDGE APSCSTSPST  780
NNCQISPQNF LNRNQLAPAM LMGDSAIEPA SNLVQDLQNK SEIRVKNEFP SSRGLDHLKY  840
KGAVTDQLEA SSSGTSYCLD AGNIQQNFSV PTFGLDSDVQ SHPRNSLPFA SNIDALAPDT  900
LLSRGYDSQK DLQNLLANYG GTTRDIETEL STAAISSQSF AVPNIPFKPS CSNDVAINDT  960
GVLNNGLWTN QTNQTQRMRT YTKVQKRGSV GRSIDVTRYK GYNELRHDLA RMFGIEGQLE  1020
DPQSSDWKLV YVDHENDILL VGDDPWEEFV SCVQSIKILS SAEVQQMSLD GDLGNVPVPN  1080
QACSGTNSGN VWRGQYDDNS AASFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1721535545388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039940.10.0PREDICTED: auxin response factor 19-like isoform X3
RefseqXP_011039941.10.0PREDICTED: auxin response factor 19-like isoform X3
TrEMBLA0A2C9W4F90.0A0A2C9W4F9_MANES; Auxin response factor
STRINGcassava4.1_000604m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49183352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19