PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025980.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family G2-like
Protein Properties Length: 466aa    MW: 50906.6 Da    PI: 7.0162
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025980.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.87.8e-31252307156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k+r++W+p+LH+rFv+a++ LGGs++AtPk+++elmkv+gLt+++vkSHLQkYRl+
  CCG025980.1 252 KARRCWSPDLHRRFVNALHMLGGSQVATPKQMRELMKVDGLTNDEVKSHLQKYRLH 307
                  68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.517249309IPR017930Myb domain
SuperFamilySSF466893.76E-16249310IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-27250310IPR009057Homeodomain-like
TIGRFAMsTIGR015577.7E-25252307IPR006447Myb domain, plants
PfamPF002495.7E-6254305IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MASPSELSLD CKPHSYSMLL KSFGEQNDQT QRLEEYLSLL EEERLKIDVF KRELPLCMQL  60
LTDAVETSRQ QLQAYRANQV PTPVLEEFIP LKTPTSETLE KTTNISDKAN WMTTAQLWSQ  120
DSNEAKPQTT LTSPKQTDIG FNVSSKLALD TKQRNGGAFL PFSKERNLCP SPTLALSSTD  180
KHMEFDHKKC SEAENGFSCP KRESSGNKIG NGGVVIEQAK GAGNNSSSDG QATNTATAAS  240
ASTTSTTQTH RKARRCWSPD LHRRFVNALH MLGGSQVATP KQMRELMKVD GLTNDEVKSH  300
LQKYRLHTRR PSPTSQAAGA PPPQLVVLGG IWVPPEYATA AAAAHGGGPT LYGAHQASHA  360
PPPHFCAAPP VSQDFYTATA TPPPPLHHHT LYHQLHLYKP TSQAHSSPES DVRGTRDRSE  420
SIEDGKSESS SWKGESGEND GGERRGLAAL REDGEESNGS EITLKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-13252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-13252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-13252305154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13252305154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13252305154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13252305154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-13252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-13252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-13252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-13252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-13252305255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-13252305255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009201.10.0PREDICTED: uncharacterized protein LOC105114375
SwissprotQ9ZQ851e-131EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A2K1WXC80.0A0A2K1WXC8_POPTR; Uncharacterized protein
STRINGPOPTR_0018s06410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-105G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]