PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

CCG025919.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 297aa MW: 33653.5 Da PI: 8.8048

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG025919.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H CCG025919.1 55 YSCSFCRREFRSAQALGGHMNVH 77 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.11E-6	52	81	No hit	No description
PROSITE profile	PS50157	11.219	55	82	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0098	55	77	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	57	77	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MEQARYWMLT KRKHSLNSNF QASTNPSFDD SWEEQAFAED AAGPLGGCIW PPRSYSCSFC 60 RREFRSAQAL GGHMNVHRRD RARLKQPPSP HNEVLQQEHQ SPHSHLQNPY KSFGFQHPSQ 120 LCNLVYSPNP NSDPGPIASP PSSSRVSTTP THENCRIKGF FPTFSSFIVE EQQKRSPRSS 180 PPPWTKLATE RCYHNSDLST EGGQNSWKVE SGCREKVNRI KTDLSVSLNL VVRRTRPSIT 240 DSEEDPSSCK KRRIDKSSLP FSLKSNSVDK SEVLEISPCT AEELDLELRL GDRPKVK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	1e-12	50	77	2	29	superman protein
2l1o_A	1e-12	50	77	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209099	0.0	AC209099.1 Populus trichocarpa clone POP015-B18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011006391.1	0.0	PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBL	B9HBV3	0.0	B9HBV3_POPTR; Uncharacterized protein
STRING	POPTR_0006s09040.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1776	30	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37740.1	2e-26	zinc-finger protein 10