PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025726.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 417aa    MW: 45470.5 Da    PI: 4.9932
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025726.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.9e-06444539
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 +C+ ++e++   +C+++   lC +C  + H+       H++
  CCG025726.1  4 VCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalskrHSR 44
                 6*****************************65677777765 PP
2zf-B_box21.84e-074689441
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                   C++++++++   C + +  lC++C   +H g       H++++
  CCG025726.1 46 LLCERCNSQPALVRCAEERISLCQNCDWIGH-GtstsastHRRQT 89
                 57**************************99*.5477888887765 PP
3CCT63.37.6e-22360403144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R  a++RYkeK+ktRkFeKk+rY+sRKa+A+ R RvKGrFvk+ 
  CCG025726.1 360 RSDAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAG 403
                  889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.812147IPR000315B-box-type zinc finger
SMARTSM003361.1E-8447IPR000315B-box-type zinc finger
CDDcd000211.54E-7447No hitNo description
PROSITE profilePS501198.8594390IPR000315B-box-type zinc finger
CDDcd000211.73E-54790No hitNo description
SMARTSM003363.44890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.368360402IPR010402CCT domain
PfamPF062031.9E-16360402IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MGYVCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSK RHSRTLLCER CNSQPALVRC  60
AEERISLCQN CDWIGHGTST SASTHRRQTI NSYSGCPSAS ELSSIWSFVL DFPSRGESTC  120
EQELGLMSIA ENSTTNSWGP TENTLGQNAS GAVEVNDRRE IAKSGVWLGS SLIPESSSVP  180
NNLDQTTRST KTSLPKLYCP GTKCPAPYED ADLYEDFNMD EMDLSLENYE ELFGVTLNNS  240
EELLENGGID SLFGSKDMSG ADSNCQGAVA AEGSSVGLVN TVQPASSNAA SADSMMSNKT  300
EPILCFTEKQ GHSSLSFSGL NVESSAADYQ DCGASSMLLM GEPPWCPPPC PESPFSSANR  360
SDAVMRYKEK KKTRKFEKKV RYASRKARAD VRRRVKGRFV KAGDAYDYDP LSQTRSF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2149950.0AC214995.1 Populus trichocarpa clone POP004-B08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009087.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-152COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2K1XX940.0A0A2K1XX94_POPTR; Uncharacterized protein
STRINGEOX935730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-119CONSTANS-like 9