PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025594.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family DBB
Protein Properties Length: 338aa    MW: 37973.8 Da    PI: 5.6231
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025594.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.13.1e-07107147539
     zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                   C+ +e+ +++  C  ++  lCe+C  e H        H++
  CCG025594.1 107 SCDVCEKAPATVICCADEAALCEKCDIEVHAAnklaskHQR 147
                  6*****************************65667777765 PP
2zf-B_box27.66e-09156197237
     zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                  + + C+ ++ek + +fC +++ l+C+dC + +H+       H
  CCG025594.1 156 KLPPCDICQEKAAFIFCVEDRALFCRDCDEPIHSAgslsanH 197
                  6789*****************************656666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.1E-12103150IPR000315B-box-type zinc finger
PfamPF006434.0E-5107147IPR000315B-box-type zinc finger
PROSITE profilePS501199.044108150IPR000315B-box-type zinc finger
CDDcd000212.08E-6108150No hitNo description
SMARTSM003367.8E-15155202IPR000315B-box-type zinc finger
PROSITE profilePS501198.973155202IPR000315B-box-type zinc finger
PfamPF006433.0E-7156198IPR000315B-box-type zinc finger
CDDcd000218.51E-8158201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MTNTDQVCPV MASSLSGHGR QHSLRQFSDT WEDSYESNYR NARRAFLSSY HFSEENGIRD  60
KLRRSVKEIN EVVRGVVSDI REEICKRRIR IKVFRFSLGL PCLILSSCDV CEKAPATVIC  120
CADEAALCEK CDIEVHAANK LASKHQRLLL QSLSNKLPPC DICQEKAAFI FCVEDRALFC  180
RDCDEPIHSA GSLSANHQRF LATGIRVALS SSCSKDTQKS SLEPPNQSEQ QTSKLPWQHA  240
SSFGSSWAVD DFLQFSDFEE STDKKEQLGL GEFDWLADMG LFSEQLPQEA LAAAEVPQLP  300
ISPPTNVNSH RPPKFSMPHK KPRIEIDDDE FFTVPDLG
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468700.0EF146870.1 Populus trichocarpa clone WS0121_F08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026444.11e-169PREDICTED: B-box zinc finger protein 24-like
SwissprotQ962887e-96BBX24_ARATH; B-box zinc finger protein 24
TrEMBLA9PEW01e-164A9PEW0_POPTR; Uncharacterized protein
STRINGPOPTR_0017s05700.11e-144(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34383157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.17e-85DBB family protein
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Imtiaz M, et al.
    Identification and functional characterization of the BBX24 promoter and gene from chrysanthemum in Arabidopsis.
    Plant Mol. Biol., 2015. 89(1-2): p. 1-19
    [PMID:26253592]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]