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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG025477.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 520aa MW: 56414.9 Da PI: 8.0796 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.4 | 7.9e-11 | 159 | 183 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ CCG025477.1 159 GEKDCAHYMLTRTCKFGDTCKFDHP 183 7889********************9 PP | |||||||
2 | zf-CCCH | 35 | 2.4e-11 | 210 | 236 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t CkyG +CkF+H++ CCG025477.1 210 PGEPDCPYFLKTQRCKYGLNCKFNHPK 236 5789*********************96 PP | |||||||
3 | zf-CCCH | 36.6 | 7.3e-12 | 258 | 282 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+++tG Ck+G++CkF+H++ CCG025477.1 258 EPQCAFYMKTGKCKFGASCKFHHPK 282 678********************96 PP | |||||||
4 | zf-CCCH | 38.5 | 1.9e-12 | 336 | 360 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f+++tG CkyG++C+++H++ CCG025477.1 336 EVDCPFYLKTGSCKYGATCRYNHPE 360 689********************96 PP | |||||||
5 | zf-CCCH | 42.6 | 1e-13 | 416 | 441 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+f+++tG+Ck+G+rCkF+H+ CCG025477.1 416 PGQAECDFYMKTGECKFGERCKFHHP 441 5789*********************8 PP | |||||||
6 | zf-CCCH | 38.5 | 2e-12 | 473 | 494 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tG CkyG++CkF H+p CCG025477.1 473 CPYYMKTGACKYGATCKFDHPP 494 ********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.887 | 157 | 185 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.001 | 157 | 184 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-5 | 158 | 184 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-8 | 159 | 183 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.765 | 209 | 237 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.5E-6 | 209 | 236 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.4E-9 | 211 | 236 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 214 | 239 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.9E-5 | 215 | 237 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.478 | 255 | 283 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-4 | 255 | 282 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-9 | 258 | 282 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.89E-6 | 259 | 283 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-5 | 261 | 281 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.925 | 333 | 361 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-6 | 333 | 360 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-10 | 336 | 360 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 337 | 361 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 339 | 360 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.601 | 415 | 443 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8E-7 | 415 | 442 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 416 | 444 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-11 | 417 | 441 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.5E-5 | 421 | 441 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 467 | 495 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-6 | 467 | 494 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.22E-5 | 471 | 494 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.0E-10 | 473 | 494 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 473 | 492 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 520 aa Download sequence Send to blast |
METLAMKKIL NNALTGVASA TFIIRNGNGS VADSAPFSKG TGSDPQSSDS SKYSVSSSMY 60 LKQSDTALRY SVDRGIASAA ATSPHLSSWT PPYGVDVPPA VESLVPGLKR TPEVLYHPTL 120 LGAHSTIGQS EDWYSTNSLA KRVRFETTSH FPIYPQRPGE KDCAHYMLTR TCKFGDTCKF 180 DHPVWVPEGG IPDWKEVPLV ATSETFPERP GEPDCPYFLK TQRCKYGLNC KFNHPKEKLS 240 LGDSENSSVS ALPERPSEPQ CAFYMKTGKC KFGASCKFHH PKDIQIPLSG LGNDNGVQTD 300 SVVKNEGITG DVNVINSPVT PALHHNSKGL PIRLGEVDCP FYLKTGSCKY GATCRYNHPE 360 RTAINPPAAA IGHPIVAPSL ANLNFGVFNP AASIYQTIDP RLSMLGVGPT FYPQRPGQAE 420 CDFYMKTGEC KFGERCKFHH PIDRSAPTEK QIQQQTVKLT LAGLPRREGA VHCPYYMKTG 480 ACKYGATCKF DHPPPGEVMA VSTSLDAAVL GAEAGTSQAQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011014515.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 37 | ||||
Swissprot | Q941Q3 | 0.0 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A3N7FSU1 | 0.0 | A0A3N7FSU1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s18390.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7558 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | floral homeotic protein (HUA1) |